RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PCDHGB1Q9Y5G3 927 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 NHSQ6T4R5 1651 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 TTC24A2A3L6 582 aaPredicted RBP13.04□□□□□ -0.32
MSH2-201ENST00000233146 WTIPA6NIX2 430 aaPredicted RBP13.04□□□□□ -0.32
MSH2-201ENST00000233146 VNN1O95497 513 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 DNAJB2P25686 324 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 NOVP48745 357 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 ST13P50502 369 aaKnown RBP13.04□□□□□ -0.32
MSH2-201ENST00000233146 SLC7A2P52569 658 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 MAPK12P53778 367 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 IMPG1Q17R60 797 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 PM20D1Q6GTS8 502 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 ZBTB33Q86T24 672 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 CHDHQ8NE62 594 aaPredicted RBP13.04□□□□□ -0.32
MSH2-201ENST00000233146 OR7D4Q8NG98 312 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 ELMO2Q96JJ3 720 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 NODALQ96S42 347 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 PRDM8Q9NQV8 689 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 CYP26B1Q9NR63 512 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 IARS2Q9NSE4 1012 aaKnown RBP13.04□□□□□ -0.32
MSH2-201ENST00000233146 GABBR1Q9UBS5 961 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 PCDHGB3Q9Y5G1 929 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 PCDHGA10Q9Y5H3 936 aa13.04□□□□□ -0.32
MSH2-201ENST00000233146 KPNA7A9QM74 516 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 SLCO1B7G3V0H7 640 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 SLC4A1P02730 911 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ALOX12P18054 663 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 DNAJB1P25685 340 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 MAGEA6P43360 314 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 POLR2GP62487 172 aaKnown RBP eCLIP13.03□□□□□ -0.32
MSH2-201ENST00000233146 COX10Q12887 443 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ZIK1Q3SY52 487 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 ASPRV1Q53RT3 343 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 TRAPPC3LQ5T215 181 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 TMEM65Q6PI78 240 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 HACD2Q6Y1H2 254 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ABRAQ8N0Z2 381 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 PARP16Q8N5Y8 322 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 SLC7A14Q8TBB6 771 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 BCL7CQ8WUZ0 217 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 HSD17B14Q9BPX1 270 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 POLR3BQ9NW08 1133 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 SLC17A6Q9P2U8 582 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 TEKT2Q9UIF3 430 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ZDHHC2Q9UIJ5 367 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 SNX7Q9UNH6 387 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 SNX4O95219 450 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 CYP2A6P11509 494 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 ROR1Q01973 937 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 PIGHQ14442 188 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 STARD3Q14849 445 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ACOX1Q15067 660 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 DDR2Q16832 855 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ZNF404Q494X3 552 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 PITRM1Q5JRX3 1037 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 LCN8Q6JVE9 175 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ZNF600Q6ZNG1 722 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 SYTL1Q8IYJ3 562 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 MPP5Q8N3R9 675 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 PPP1R13LQ8WUF5 828 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 MCRS1Q96EZ8 462 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 FYTTD1Q96QD9 318 aaKnown RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 RANGRFQ9HD47 186 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 PCDHB3Q9Y5E6 796 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 TCRBV5S1A1TA0A578 114 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 TRPC5OSA6NMA1 111 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 SRP72O76094 671 aaKnown RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 PAHP00439 452 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 HDCP19113 662 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 KDELR1P24390 212 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 PRIM2P49643 509 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 IL1RL1Q01638 556 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 EMX1Q04741 257 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 PRKCDQ05655 676 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 C6orf132Q5T0Z8 1188 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 TAF2Q6P1X5 1199 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 ERO1BQ86YB8 467 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 PLCZ1Q86YW0 608 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 C8orf59Q8N0T1 100 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 PELI3Q8N2H9 469 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 GLB1L3Q8NCI6 653 aaPredicted RBP13.03□□□□□ -0.32
MSH2-201ENST00000233146 SPATA18Q8TC71 538 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 LGALS12Q96DT0 336 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 MCEEQ96PE7 176 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 PAK5Q9P286 719 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 KCNE2Q9Y6J6 123 aa13.03□□□□□ -0.32
MSH2-201ENST00000233146 A8MUA0 341 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 TSPAN4O14817 238 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 TYK2P29597 1187 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 KRT20P35900 424 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 PLEKHM3Q6ZWE6 761 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 ADGRF4Q8IZF3 695 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 PLD6Q8N2A8 252 aaKnown RBP13.02□□□□□ -0.32
MSH2-201ENST00000233146 NIPA2Q8N8Q9 360 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 MCUQ8NE86 351 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 FLCNQ8NFG4 579 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 SLC7A6Q92536 515 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 MOCOSQ96EN8 888 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 UCK2Q9BZX2 261 aa13.02□□□□□ -0.32
MSH2-201ENST00000233146 MTMR10Q9NXD2 777 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms