RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 SPO11Q9Y5K1 396 aa14.74□□□□□ -0.05
CD48-203ENST00000613788 ANKRD36A6QL64 1941 aa14.74□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3DA0A087WVF3 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3IA0A087WXS9 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3EA0A087X179 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3KA0A087X1G2 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 C1orf232A0A0U1RR37 186 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 HEATR9A2RTY3 570 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 FAM86C2PA6NEL3 165 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3FA6NER0 549 aaPredicted RBP14.73□□□□□ -0.05
CD48-203ENST00000613788 LRRC72A6NJI9 287 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 A8MX80 341 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3LB9A6J9 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 EIF3HO15372 352 aaKnown RBP eCLIP14.73□□□□□ -0.05
CD48-203ENST00000613788 PCDH8O95206 1070 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3HP0C7X1 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 MGAT1P26572 445 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 CD6P30203 668 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 ADPRHP54922 357 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TAS2R38P59533 333 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 CSTF1Q05048 431 aaKnown RBP14.73□□□□□ -0.05
CD48-203ENST00000613788 FNBP1LQ5T0N5 605 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 DENND2CQ68D51 928 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3GQ6DHY5 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3CQ6IPX1 549 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 NLRP9Q7RTR0 991 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 TBC1D3Q8IZP1 549 aaPredicted RBP14.73□□□□□ -0.05
CD48-203ENST00000613788 PPHLN1Q8NEY8 458 aaKnown RBP14.73□□□□□ -0.05
CD48-203ENST00000613788 CXorf40AQ8TE69 158 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 PTCD2Q8WV60 388 aaKnown RBP14.73□□□□□ -0.05
CD48-203ENST00000613788 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.73□□□□□ -0.05
CD48-203ENST00000613788 LRRC39Q96DD0 335 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 SPACA7Q96KW9 195 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 SMIM14Q96QK8 99 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 RANBP9Q96S59 729 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 FMO2Q99518 471 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 C1QTNF1Q9BXJ1 281 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 PHACTR1Q9C0D0 580 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.73□□□□□ -0.05
CD48-203ENST00000613788 SAMD15Q9P1V8 674 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 NFU1Q9UMS0 254 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 ZNF711Q9Y462 761 aa14.73□□□□□ -0.05
CD48-203ENST00000613788 CLDN7O95471 211 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 ELFN1P0C7U0 828 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 LPOP22079 712 aaPredicted RBP14.72□□□□□ -0.05
CD48-203ENST00000613788 TNFRSF8P28908 595 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 ACSL1P33121 698 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 HMGCLP35914 325 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 NUBP1P53384 320 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 SEMG2Q02383 582 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 CBLBQ13191 982 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 MTM1Q13496 603 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 PTPRRQ15256 657 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 CDKN3Q16667 212 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 BBS9Q3SYG4 887 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 TMEM31Q5JXX7 168 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 LRRC66Q68CR7 880 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 WDR93Q6P2C0 686 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 CASC4Q6P4E1 433 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 TSSK4Q6SA08 328 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 LIPIQ6XZB0 460 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 LYSMD3Q7Z3D4 306 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 TMC3Q7Z5M5 1100 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 RAVER1Q8IY67 606 aaKnown RBP14.72□□□□□ -0.05
CD48-203ENST00000613788 OR2T34Q8NGX1 318 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 NAT9Q9BTE0 207 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 FAM126AQ9BYI3 521 aaPredicted RBP14.72□□□□□ -0.05
CD48-203ENST00000613788 C11orf16Q9NQ32 467 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 WSB2Q9NYS7 404 aaPredicted RBP14.72□□□□□ -0.05
CD48-203ENST00000613788 ITM2BQ9Y287 266 aa14.72□□□□□ -0.05
CD48-203ENST00000613788 IGHV1OR15-9A0A0B4J2B8 117 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 FAM47DPA6NHR8 397 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 E7ESA3 106 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 PSMD11O00231 422 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 SPINT1O43278 529 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 SEMA4FO95754 770 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 LHCGRP22888 699 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 LIG3P49916 1009 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 RPS21P63220 83 aaKnown RBP14.71□□□□□ -0.05
CD48-203ENST00000613788 PTSQ03393 145 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 DHX9Q08211 1270 aaKnown RBP14.71□□□□□ -0.05
CD48-203ENST00000613788 RALGDSQ12967 914 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 PDIA2Q13087 525 aaKnown RBP14.71□□□□□ -0.05
CD48-203ENST00000613788 SEPT6Q14141 434 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 SKIDA1Q1XH10 827 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 MAP7D1Q3KQU3 841 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 KIAA1161Q6NSJ0 714 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 CCNI2Q6ZMN8 369 aaPredicted RBP14.71□□□□□ -0.05
CD48-203ENST00000613788 TSPAN33Q86UF1 283 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 WDR5BQ86VZ2 330 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 LONP2Q86WA8 852 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 CCNJLQ8IV13 435 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 MAML2Q8IZL2 1156 aaPredicted RBP14.71□□□□□ -0.05
CD48-203ENST00000613788 RLN3Q8WXF3 142 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 TOE1Q96GM8 510 aaKnown RBP14.71□□□□□ -0.05
CD48-203ENST00000613788 SIGLEC10Q96LC7 697 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 PWWP2AQ96N64 755 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 C19orf43Q9BQ61 176 aa14.71□□□□□ -0.05
CD48-203ENST00000613788 WRAP53Q9BUR4 548 aaKnown RBP14.71□□□□□ -0.05
CD48-203ENST00000613788 CD93Q9NPY3 652 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms