RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CHRM1P11229 460 aaPredicted RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 HLA-EP13747 358 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 HNF1BP35680 557 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 RECQLP46063 649 aaPredicted RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 ATP1A2P50993 1020 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 GALK1P51570 392 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 MPP2Q14168 576 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 C9orf64Q5T6V5 341 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 GRTP1Q5TC63 336 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 GPR153Q6NV75 609 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 NEPROQ6NW34 567 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 TXNDC11Q6PKC3 985 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 TAOK1Q7L7X3 1001 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 STRA8Q7Z7C7 330 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 OR4K2Q8NGD2 314 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 CDKN2AIPNLQ96HQ2 116 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 MCCC1Q96RQ3 725 aaPredicted RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 RBBP8Q99708 897 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 PHF7Q9BWX1 381 aaPredicted RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 TRPV5Q9NQA5 729 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 SENP1Q9P0U3 644 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 PHTF1Q9UMS5 762 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 STARD13Q9Y3M8 1113 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 TRIOO75962 3097 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 TSPAN11A1L157 253 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 CCDC162PA2VCL2 907 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 OR51F1A6NGY5 319 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 C2orf81A6NN90 581 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 RFPL1O75677 317 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 KRT37O76014 449 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 KRT38O76015 456 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 AHSGP02765 367 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 ITGA2BP08514 1039 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 BRAFP15056 766 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 LPOP22079 712 aaPredicted RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 CNTFP26441 200 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 IL12RB1P42701 662 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 SLC1A2P43004 574 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 TMPRSS15P98073 1019 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 CTBP1Q13363 440 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 FNDC3BQ53EP0 1204 aaKnown RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 ARSIQ5FYB1 569 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 MROH9Q5TGP6 573 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 TIFABQ6ZNK6 161 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 LYSMD3Q7Z3D4 306 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 SLC44A3Q8N4M1 653 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 C2CD4AQ8NCU7 369 aaPredicted RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 MTBPQ96DY7 904 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 SCRN2Q96FV2 425 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 KLHL32Q96NJ5 620 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 ACOX2Q99424 681 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 POLR3BQ9NW08 1133 aaPredicted RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 IL17CQ9P0M4 197 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 LIMD1Q9UGP4 676 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 IL36AQ9UHA7 158 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 NPIPB15A6NHN6 443 aaPredicted RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 APODP05090 189 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 KRT4P19013 534 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 HMGCLP35914 325 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 LIMK2P53671 638 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 CSE1LP55060 971 aaKnown RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 MPP1Q00013 466 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 PPARDQ03181 441 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 ENPP2Q13822 863 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 SKIV2LQ15477 1246 aaKnown RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 SMAD2Q15796 467 aaKnown RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 LGSNQ5TDP6 509 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 EGFLAMQ63HQ2 1017 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 ZNF470Q6ECI4 717 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 ZC3HC1Q86WB0 502 aaKnown RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 C4orf33Q8N1A6 199 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 PNPLA1Q8N8W4 532 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 MDM1Q8TC05 714 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 CSGALNACT1Q8TDX6 532 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 LRIG1Q96JA1 1093 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 FAM167BQ9BTA0 163 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 ZDHHC4Q9NPG8 344 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 NSMCE4AQ9NXX6 385 aa14.29□□□□□ -0.12
USP39-220ENST00000613444 MARCH4Q9P2E8 410 aaPredicted RBP14.29□□□□□ -0.12
USP39-220ENST00000613444 LRRK1Q38SD2 2015 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 EDDM13A0A1B0GTR0 161 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 A0A1W2PQ67 120 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 K7EQS6 105 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 TYROBPO43914 113 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 GOT2P00505 430 aaKnown RBP14.28□□□□□ -0.12
USP39-220ENST00000613444 ALDOAP04075 364 aaKnown RBP14.28□□□□□ -0.12
USP39-220ENST00000613444 FOSL2P15408 326 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 CTHP32929 405 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 PRAMEP78395 509 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 SLC18A2Q05940 514 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 PREPLQ4J6C6 727 aaPredicted RBP14.28□□□□□ -0.12
USP39-220ENST00000613444 FSTL4Q6MZW2 842 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 PTAR1Q7Z6K3 402 aaPredicted RBP14.28□□□□□ -0.12
USP39-220ENST00000613444 CILP2Q8IUL8 1156 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 ARFGAP2Q8N6H7 521 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 OR6P1Q8NGX9 317 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 UCMAQ8WVF2 138 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 PPM1EQ8WY54 764 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 HLA-CQ95604 372 aa14.28□□□□□ -0.12
USP39-220ENST00000613444 KLF6Q99612 283 aaPredicted RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms