RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 CIR1Q86X95 450 aaPredicted RBP14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 DTX1Q86Y01 620 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 DCP2Q8IU60 420 aaKnown RBP14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 SRRM1Q8IYB3 904 aaKnown RBP14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 LGI2Q8N0V4 545 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 KYQ8NBH2 561 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 NTAN1Q96AB6 310 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 TMEM74Q96NL1 305 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 WDR24Q96S15 920 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 DDX50Q9BQ39 737 aaKnown RBP14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 TLR10Q9BXR5 811 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 ZNF768Q9H5H4 540 aaKnown RBP14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 ANLNQ9NQW6 1124 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 GPR27Q9NS67 375 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 SPASTQ9UBP0 616 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 JRKLQ9Y4A0 524 aa14.05□□□□□ -0.16
SHKBP1-218ENST00000598907 A0A1W2PQM1 296 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 MIF4GDA9UHW6 222 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 C9orf172C9J069 976 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 TMX2-CTNND1H3BSU7 103 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 DDX3YO15523 660 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 SPINT1O43278 529 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 PSTPIP1O43586 416 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 SPOPO43791 374 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 TUBB4AP04350 444 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 GNLYP22749 145 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 ELAVL4P26378 380 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 CCKBRP32239 447 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 CCR1P32246 355 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 CTNNA1P35221 906 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 ADRA1BP35368 520 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 DCTP40126 519 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 CD97P48960 835 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 EIF2B5Q13144 721 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 HADHQ16836 314 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 BOLA3Q53S33 107 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 ZC3H12AQ5D1E8 599 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 FAM131BQ86XD5 332 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 PSTKQ8IV42 348 aaKnown RBP14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 RHOT1Q8IXI2 618 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 CCDC185Q8N715 623 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 FAM71BQ8TC56 605 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 TEKT4Q8WW24 435 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 AZIN2Q96A70 460 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 LRRC61Q9BV99 259 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 WDCPQ9H6R7 721 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 DYRK4Q9NR20 520 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 PCSK1NQ9UHG2 260 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 SLC25A13Q9UJS0 675 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 FZD10Q9ULW2 581 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 PCDHA3Q9Y5H8 950 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 ITPR3Q14573 2671 aa14.04□□□□□ -0.16
SHKBP1-218ENST00000598907 CSMD1Q96PZ7 3565 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 SYNJ2BP-COX16A0A087WUM0 186 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 CCDC66A2RUB6 948 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 PRPSAP2O60256 369 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 CTSLP07711 333 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 CELA2BP08218 269 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 RARAP10276 462 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 PRKAR1AP10644 381 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 SLC2A3P11169 496 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 LIFP15018 202 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 NR1D1P20393 614 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 RABIFP47224 123 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 ATP1A2P50993 1020 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 ARSEP51690 589 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 OXCT1P55809 520 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 FGL2Q14314 439 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 ATP13A4Q4VNC1 1196 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 TMEM259Q4ZIN3 620 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 LACTB2Q53H82 288 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 ARTNQ5T4W7 220 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 ERMARDQ5T6L9 678 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 RAP1GAP2Q684P5 730 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 NEK5Q6P3R8 708 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 SCYL2Q6P3W7 929 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 CHSY1Q86X52 802 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 PHACTR4Q8IZ21 702 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 GRIN3AQ8TCU5 1115 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 KRT35Q92764 455 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 HAPLN3Q96S86 360 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 SNRNP25Q9BV90 132 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 TKTL2Q9H0I9 626 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 COX16Q9P0S2 106 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 XPO7Q9UIA9 1087 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 PACSIN2Q9UNF0 486 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 DOCK4Q8N1I0 1966 aa14.03□□□□□ -0.16
SHKBP1-218ENST00000598907 PRR19A6NJB7 356 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 MCF2LO15068 1137 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 ALOX15BO15296 676 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 YY2O15391 372 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 SEMA7AO75326 666 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 VPS4BO75351 444 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 PAK4O96013 591 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 MARCKSL1P49006 195 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 MTA1Q13330 715 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 DLG2Q15700 870 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 PHF19Q5T6S3 580 aa14.02□□□□□ -0.17
SHKBP1-218ENST00000598907 KATNAL2Q8IYT4 538 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms