RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PHTF1Q9UMS5 762 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 EFR3BQ9Y2G0 817 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 PCDHGB2Q9Y5G2 931 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 TP53BP1Q12888 1972 aaPredicted RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 A0A0J9YYE9 177 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 SPTY2D1-AS1A0A0U1RR47 76 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 MIF4GDA9UHW6 222 aaKnown RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 F5H423 210 aaPredicted RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 K7ESM1 405 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 FPGTO14772 594 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 LZTS3O60299 673 aaPredicted RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 SDC3O75056 442 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 MT-CYBP00156 380 aaPredicted RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 TRBC1P01850 177 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 CCDC175P0C221 793 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 GIMD1P0DJR0 217 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 CEACAM1P13688 526 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 KCNA4P22459 653 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 CES1P23141 567 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 RBL1P28749 1068 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 EPHA8P29322 1005 aaPredicted RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 VIPR1P32241 457 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 CCT8P50990 548 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 PTSQ03393 145 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 KLF1Q13351 362 aaPredicted RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 PDE1CQ14123 709 aaPredicted RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 INPP5AQ14642 412 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 LRRC14Q15048 493 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 QPCTQ16769 361 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 MEI1Q5TIA1 1274 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 CRTC1Q6UUV9 634 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 KDELC2Q7Z4H8 507 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 SYCE1Q8N0S2 351 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 ZNF567Q8N184 647 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 TXLNBQ8N3L3 684 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 SLC25A45Q8N413 288 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 PAF1Q8N7H5 531 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 HTR3CQ8WXA8 447 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 SKA1Q96BD8 255 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 GORASP1Q9BQQ3 440 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 TSGA10Q9BZW7 698 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 SLC25A51Q9H1U9 297 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 TCEAL2Q9H3H9 227 aaPredicted RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 PCDH9Q9HC56 1237 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 R3HDM2Q9Y2K5 976 aaKnown RBP11.18□□□□□ -0.62
VRK3-210ENST00000596121 PPP2R2CQ9Y2T4 447 aa11.18□□□□□ -0.62
VRK3-210ENST00000596121 A0A1W2PQ67 120 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 KRT86O43790 486 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 TOP3BO95985 862 aaKnown RBP11.17□□□□□ -0.62
VRK3-210ENST00000596121 PCCBP05166 539 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 C1SP09871 688 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 ELFN1P0C7U0 828 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 NFKB1P19838 968 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 ETV3P41162 512 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 RABIFP47224 123 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 XRCC4Q13426 336 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 GALNT3Q14435 633 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 ACOX1Q15067 660 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 LRRC66Q68CR7 880 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 DENND2CQ68D51 928 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 KDELC1Q6UW63 502 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 Q6ZVL8 140 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 BZW1Q7L1Q6 419 aaKnown RBP11.17□□□□□ -0.62
VRK3-210ENST00000596121 ERMP1Q7Z2K6 904 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 TECPR1Q7Z6L1 1165 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 LPCAT1Q8NF37 534 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 RHBDD1Q8TEB9 315 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 SETD7Q8WTS6 366 aaKnown RBP11.17□□□□□ -0.62
VRK3-210ENST00000596121 EID2BQ96D98 161 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 OXNAD1Q96HP4 312 aaPredicted RBP11.17□□□□□ -0.62
VRK3-210ENST00000596121 PDLIM2Q96JY6 352 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 APOOQ9BUR5 198 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 USP29Q9HBJ7 922 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 UBP1Q9NZI7 540 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 OR1A2Q9Y585 309 aa11.17□□□□□ -0.62
VRK3-210ENST00000596121 HACD1B0YJ81 288 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 H7C0C1 242 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 TRIM38O00635 465 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 DFNA5O60443 496 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 MAGEC1O60732 1142 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 NEBLO76041 1014 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 CLDN7O95471 211 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 CYP2A6P11509 494 aaPredicted RBP11.16□□□□□ -0.62
VRK3-210ENST00000596121 ATP5OP48047 213 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 EIF3EP60228 445 aaKnown RBP11.16□□□□□ -0.62
VRK3-210ENST00000596121 TRIP6Q15654 476 aaKnown RBP11.16□□□□□ -0.62
VRK3-210ENST00000596121 PCSK7Q16549 785 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 SLCO6A1Q86UG4 719 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 REXO1L1PQ8IX06 675 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 RBFAQ8N0V3 343 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 EID2Q8N6I1 236 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 UBL4BQ8N7F7 174 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 FAM174AQ8TBP5 190 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 DTD2Q96FN9 168 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 WDR24Q96S15 920 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 AGAP2Q99490 1192 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 LGR4Q9BXB1 951 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 TLR10Q9BXR5 811 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 DNAJC28Q9NX36 388 aa11.16□□□□□ -0.62
VRK3-210ENST00000596121 TOR4AQ9NXH8 423 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms