RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 LRRC14Q15048 493 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 UGP2Q16851 508 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 ALG11Q2TAA5 492 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 BROXQ5VW32 411 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 MACC1Q6ZN28 852 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 RBM44Q6ZP01 1051 aaKnown RBP12.57□□□□□ -0.4
UPF1-203ENST00000594504 TXLNBQ8N3L3 684 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 ZNF843Q8N446 348 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 PLA2G15Q8NCC3 412 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 ACRBPQ8NEB7 543 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 FAM71BQ8TC56 605 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 CASKIN2Q8WXE0 1202 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 FUBP1Q96AE4 644 aaKnown RBP12.57□□□□□ -0.4
UPF1-203ENST00000594504 CALR3Q96L12 384 aaKnown RBP12.57□□□□□ -0.4
UPF1-203ENST00000594504 CSPG4P5Q96PW8 444 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 APOOQ9BUR5 198 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 LRRC19Q9H756 370 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 PDFQ9HBH1 243 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 PCDH12Q9NPG4 1184 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 UBA2Q9UBT2 640 aaPredicted RBP12.57□□□□□ -0.4
UPF1-203ENST00000594504 DOLKQ9UPQ8 538 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 REXO2Q9Y3B8 237 aaKnown RBP12.57□□□□□ -0.4
UPF1-203ENST00000594504 OR1A2Q9Y585 309 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 ANKRD36A6QL64 1941 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 BTNL10A8MVZ5 291 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 A8MX80 341 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 RIOK3O14730 519 aaKnown RBP12.56□□□□□ -0.4
UPF1-203ENST00000594504 LZTS3O60299 673 aaPredicted RBP12.56□□□□□ -0.4
UPF1-203ENST00000594504 PCCBP05166 539 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 CTSEP14091 401 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 RPIAP49247 311 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 LIG3P49916 1009 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 PAPOLAP51003 745 aaKnown RBP12.56□□□□□ -0.4
UPF1-203ENST00000594504 ARSEP51690 589 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 HK3P52790 923 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 PDX1P52945 283 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 TMPRSS3P57727 454 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 CCL7P80098 99 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 ELP6Q0PNE2 266 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 PDK2Q15119 407 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 TAF1BQ53T94 588 aaPredicted RBP12.56□□□□□ -0.4
UPF1-203ENST00000594504 LRRC38Q5VT99 294 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 ESRP1Q6NXG1 681 aaKnown RBP12.56□□□□□ -0.4
UPF1-203ENST00000594504 ARHGAP36Q6ZRI8 547 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 KIAA1328Q86T90 577 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 MAP7D3Q8IWC1 876 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 SFTPA2Q8IWL1 248 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 TP53INP2Q8IXH6 220 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 LZTR1Q8N653 840 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 KCTD6Q8NC69 237 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 TSEN2Q8NCE0 465 aaKnown RBP12.56□□□□□ -0.4
UPF1-203ENST00000594504 CCDC112Q8NEF3 446 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 TPCN2Q8NHX9 752 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 PCDH19Q8TAB3 1148 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 GLMNQ92990 594 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 NSMCE3Q96MG7 304 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 C1QTNF7Q9BXJ2 289 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 SEMA4CQ9C0C4 833 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 THSD1Q9NS62 852 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 NCKIPSDQ9NZQ3 722 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 TFR2Q9UP52 801 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 DSPP15924 2871 aaKnown RBP12.56□□□□□ -0.4
UPF1-203ENST00000594504 LRP4O75096 1905 aa12.56□□□□□ -0.4
UPF1-203ENST00000594504 NBEAQ8NFP9 2946 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 TSPAN11A1L157 253 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 TTC24A2A3L6 582 aaPredicted RBP12.55□□□□□ -0.4
UPF1-203ENST00000594504 RCCD1A6NED2 376 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 ARHGAP42A6NI28 874 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 NTN3O00634 580 aaPredicted RBP12.55□□□□□ -0.4
UPF1-203ENST00000594504 PJA2O43164 708 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 SPOPO43791 374 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 PRAMEF11O60813 436 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 TNFSF15O95150 251 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 KRT10P13645 584 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 PEX5P50542 639 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 SRP54P61011 504 aaKnown RBP12.55□□□□□ -0.4
UPF1-203ENST00000594504 CFHR1Q03591 330 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 SPIDRQ14159 915 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 DPYSL3Q14195 570 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 LY6DQ14210 128 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 ATP13A4Q4VNC1 1196 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 ZFYVE27Q5T4F4 411 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 AFMIDQ63HM1 303 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 C11orf63Q6NUN7 778 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 TMCO3Q6UWJ1 677 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 B3GNT8Q7Z7M8 397 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 SRLQ86TD4 932 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 RHOT1Q8IXI2 618 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 KYQ8NBH2 561 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 LSM14AQ8ND56 463 aaKnown RBP12.55□□□□□ -0.4
UPF1-203ENST00000594504 CCDC74AQ96AQ1 378 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 TBATAQ96M53 351 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 ZNF670Q9BS34 389 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 MRPL40Q9NQ50 206 aaKnown RBP12.55□□□□□ -0.4
UPF1-203ENST00000594504 WDR70Q9NW82 654 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 GPR34Q9UPC5 381 aa12.55□□□□□ -0.4
UPF1-203ENST00000594504 ANKRD11Q6UB99 2663 aaPredicted RBP12.54□□□□□ -0.4
UPF1-203ENST00000594504 A0A1W2PQM1 296 aa12.54□□□□□ -0.4
UPF1-203ENST00000594504 CDRT15L2A8MXV6 281 aa12.54□□□□□ -0.4
UPF1-203ENST00000594504 ZNF487B1APH4 448 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms