RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GM2AP17900 193 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 IL4RP24394 825 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 RBMS1P29558 406 aaKnown RBP20.55■□□□□ 0.88
SHMT1-209ENST00000582653 SRP54P61011 504 aaKnown RBP20.55■□□□□ 0.88
SHMT1-209ENST00000582653 MAXP61244 160 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 MTM1Q13496 603 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 ZNF235Q14590 738 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 ATP13A4Q4VNC1 1196 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 GKN2Q86XP6 184 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 SLC39A7Q92504 469 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 PRR11Q96HE9 360 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-209ENST00000582653 NAF1Q96HR8 494 aaKnown RBP20.55■□□□□ 0.88
SHMT1-209ENST00000582653 DPH1Q9BZG8 443 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 XPO4Q9C0E2 1151 aaKnown RBP20.55■□□□□ 0.88
SHMT1-209ENST00000582653 GULP1Q9UBP9 304 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 SHROOM3Q8TF72 1996 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 ANKRD36A6QL64 1941 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 A0A1W2PNU3 283 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-209ENST00000582653 MYO1FO00160 1098 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 NTN3O00634 580 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-209ENST00000582653 HOXC4P09017 264 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-209ENST00000582653 ELFN1P0C7U0 828 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 CR2P20023 1033 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 CDH6P55285 790 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 KRT81Q14533 505 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 C3orf38Q5JPI3 329 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 DPPA4Q7L190 304 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 ARL10Q8N8L6 244 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 PDCD6IPQ8WUM4 868 aaKnown RBP20.54■□□□□ 0.88
SHMT1-209ENST00000582653 IQCDQ96DY2 449 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 WDR92Q96MX6 357 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 NOD2Q9HC29 1040 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 B4GALT6Q9UBX8 382 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 NENFQ9UMX5 172 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 DGKBQ9Y6T7 804 aa20.54■□□□□ 0.88
SHMT1-209ENST00000582653 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-209ENST00000582653 GJC1P36383 396 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 TRIM23P36406 574 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 UCNP55089 124 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 CXADRP78310 365 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 SPIDRQ14159 915 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 ACOX1Q15067 660 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 PTPRRQ15256 657 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 BROXQ5VW32 411 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 PELI3Q8N2H9 469 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 ATPAF2Q8N5M1 289 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 OR6C4Q8NGE1 309 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 ZNF564Q8TBZ8 553 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-209ENST00000582653 SPOCK2Q92563 424 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 FUBP1Q96AE4 644 aaKnown RBP20.53■□□□□ 0.88
SHMT1-209ENST00000582653 NUDCD1Q96RS6 583 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 RBM15Q96T37 977 aaKnown RBP eCLIP20.53■□□□□ 0.88
SHMT1-209ENST00000582653 SIRPGQ9P1W8 387 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 KLQ9UEF7 1012 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 SSUH2Q9Y2M2 353 aa20.53■□□□□ 0.88
SHMT1-209ENST00000582653 FASNP49327 2511 aaKnown RBP20.53■□□□□ 0.88
SHMT1-209ENST00000582653 TMEM202A6NGA9 273 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 HTRA2O43464 458 aaPredicted RBP20.52■□□□□ 0.88
SHMT1-209ENST00000582653 ARSEP51690 589 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 TRAF2Q12933 501 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 MARC1Q5VT66 337 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 WDR36Q8NI36 951 aaKnown RBP20.52■□□□□ 0.88
SHMT1-209ENST00000582653 PCDH19Q8TAB3 1148 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 KCNE4Q8WWG9 221 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 PDXPQ96GD0 296 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 MGME1Q9BQP7 344 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 LGR4Q9BXB1 951 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 PACSIN1Q9BY11 444 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 MRPL40Q9NQ50 206 aaKnown RBP20.52■□□□□ 0.88
SHMT1-209ENST00000582653 CTTNBP2NLQ9P2B4 639 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 GPR34Q9UPC5 381 aa20.52■□□□□ 0.88
SHMT1-209ENST00000582653 COL27A1Q8IZC6 1860 aaPredicted RBP20.52■□□□□ 0.87
SHMT1-209ENST00000582653 A0A1W2PQ67 120 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 CDRT15L2A8MXV6 281 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 CACNB4O00305 520 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-209ENST00000582653 TNFRSF10CO14798 259 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 MAP3K6O95382 1288 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 HNRNPH3P31942 346 aaKnown RBP20.51■□□□□ 0.87
SHMT1-209ENST00000582653 SERPINB6P35237 376 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 HSPA9P38646 679 aaKnown RBP20.51■□□□□ 0.87
SHMT1-209ENST00000582653 MLLT3P42568 568 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-209ENST00000582653 MMP13P45452 471 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 TMPRSS3P57727 454 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 SKOR1P84550 965 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 C19orf57Q0VDD7 668 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 HADHQ16836 314 aaKnown RBP20.51■□□□□ 0.87
SHMT1-209ENST00000582653 DENND2CQ68D51 928 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 OGFOD3Q6PK18 319 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 ARL14Q8N4G2 192 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 OR56A4Q8NGH8 313 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 FAM71BQ8TC56 605 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 NSMCE1Q8WV22 266 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 OR1E3Q8WZA6 343 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 CCDC97Q96F63 343 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-209ENST00000582653 RABGEF1Q9UJ41 708 aa20.51■□□□□ 0.87
SHMT1-209ENST00000582653 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.51■□□□□ 0.87
SHMT1-209ENST00000582653 TMX2-CTNND1H3BSU7 103 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 KLK10O43240 276 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 MFSD11O43934 449 aa20.5■□□□□ 0.87
SHMT1-209ENST00000582653 SOCS5O75159 536 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms