RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GPR150Q8NGU9 434 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ZNF599Q96NL3 588 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 CDRT15Q96T59 188 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 TSEN34Q9BSV6 310 aaKnown RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 VCXQ9H320 206 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 MEAF6Q9HAF1 191 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 TNFRSF12AQ9NP84 129 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ZDHHC7Q9NXF8 308 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.11□□□□□ -0.79
VPS53-220ENST00000576149 SRRDQ9UH36 339 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 PCDHB7Q9Y5E2 793 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 A0A1W2PQ45 241 aaPredicted RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 A0A1W2PQY0 241 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 GLP2RO95838 553 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 IMPDH1P20839 514 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 FDXRP22570 491 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 PAX7P23759 505 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 KCNC1P48547 511 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 SLC11A1P49279 550 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 GATMP50440 423 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 KCNQ1P51787 676 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 THOP1P52888 689 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 PLK1P53350 603 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 DUSP4Q13115 394 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 C5orf22Q49AR2 442 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 RTP2Q5QGT7 225 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 FUT10Q6P4F1 479 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 RPS27LQ71UM5 84 aaKnown RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 APLFQ8IW19 511 aaPredicted RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 CFAP52Q8N1V2 620 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 AFAP1L2Q8N4X5 818 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 BRSK1Q8TDC3 778 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 BLOC1S5Q8TDH9 187 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 SH3RF2Q8TEC5 729 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 PHF21BQ96EK2 531 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 DNAJC1Q96KC8 554 aaKnown RBP10.11□□□□□ -0.79
VPS53-220ENST00000576149 VCX3BQ9H321 246 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 GSTO2Q9H4Y5 243 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 WDR41Q9HAD4 459 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 STARD7Q9NQZ5 370 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 DLGAP2Q9P1A6 1054 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 SCOCQ9UIL1 159 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 PACSIN3Q9UKS6 424 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 SUFUQ9UMX1 484 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 CRYL1Q9Y2S2 319 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 ARL5AQ9Y689 179 aa10.11□□□□□ -0.79
VPS53-220ENST00000576149 BRCA2P51587 3418 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 F5H5T6 163 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 CASQ2O14958 399 aaPredicted RBP10.1□□□□□ -0.79
VPS53-220ENST00000576149 CD3EAPO15446 510 aaKnown RBP10.1□□□□□ -0.79
VPS53-220ENST00000576149 COQ9O75208 318 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 RPP40O75818 363 aaKnown RBP10.1□□□□□ -0.79
VPS53-220ENST00000576149 GOT2P00505 430 aaKnown RBP10.1□□□□□ -0.79
VPS53-220ENST00000576149 SELPP16109 830 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 HOXB8P17481 243 aaPredicted RBP10.1□□□□□ -0.79
VPS53-220ENST00000576149 INHBCP55103 352 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 C1QTNF8P60827 252 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 XIAPP98170 497 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 ART3Q13508 389 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 GALNT3Q14435 633 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 PTPRCAPQ14761 206 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 GPNMBQ14956 572 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 LPCAT4Q643R3 524 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 ZNF549Q6P9A3 640 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 PIM3Q86V86 326 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 LGI2Q8N0V4 545 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 DBF4BQ8NFT6 615 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 GIPC2Q8TF65 315 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 GDPD5Q8WTR4 605 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 C2orf15Q8WU43 125 aaKnown RBP10.1□□□□□ -0.79
VPS53-220ENST00000576149 PPP2R3CQ969Q6 453 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 L3HYPDHQ96EM0 354 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 TRMOQ9BU70 441 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 KLHL4Q9C0H6 718 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 ALG9Q9H6U8 611 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 MRGBPQ9NV56 204 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 HCSTQ9UBK5 93 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 RIMKLBQ9ULI2 386 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 FIS1Q9Y3D6 152 aa10.1□□□□□ -0.79
VPS53-220ENST00000576149 MTF2Q9Y483 593 aaPredicted RBP10.1□□□□□ -0.79
VPS53-220ENST00000576149 A0A0D9SEW6 157 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 CCDC162PA2VCL2 907 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 SLC38A8A6NNN8 435 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 H7C4K7 107 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 UBFD1O14562 309 aaKnown RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 NBNO60934 754 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 SERPINF2P08697 491 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 ENO3P13929 434 aaPredicted RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 ATF6P18850 670 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 XRCC1P18887 633 aaPredicted RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 HOXD9P28356 352 aaPredicted RBP10.09□□□□□ -0.79
VPS53-220ENST00000576149 SLC6A4P31645 630 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 DPP6P42658 865 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 SUOXP51687 545 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 NFKB2Q00653 900 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 TIAL1Q01085 375 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS53-220ENST00000576149 CEACAM7Q14002 265 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 SEMA3AQ14563 771 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 LRRC36Q1X8D7 754 aa10.09□□□□□ -0.79
VPS53-220ENST00000576149 SFT2D3Q587I9 215 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms