RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MATN3O15232 486 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 HEXIM1O94992 359 aaKnown RBP14.91□□□□□ -0.02
CLN3-213ENST00000565047 PRLP01236 227 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 PCCBP05166 539 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 PDHA1P08559 390 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 DUSP3P51452 185 aaPredicted RBP14.91□□□□□ -0.02
CLN3-213ENST00000565047 SRP54P61011 504 aaKnown RBP14.91□□□□□ -0.02
CLN3-213ENST00000565047 GBE1Q04446 702 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 TCEAL1Q15170 157 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 ESRP1Q6NXG1 681 aaKnown RBP14.91□□□□□ -0.02
CLN3-213ENST00000565047 PNCKQ6P2M8 343 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 LVRNQ6Q4G3 990 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 SLC35G2Q8TBE7 412 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 ARRDC2Q8TBH0 407 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 OR1E3Q8WZA6 343 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 NXPE2Q96DL1 559 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 PDXPQ96GD0 296 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 RBM15Q96T37 977 aaKnown RBP eCLIP14.91□□□□□ -0.02
CLN3-213ENST00000565047 NHEJ1Q9H9Q4 299 aaPredicted RBP14.91□□□□□ -0.02
CLN3-213ENST00000565047 SPTLC3Q9NUV7 552 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 NCKIPSDQ9NZQ3 722 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 LCMT1Q9UIC8 334 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 PHTF1Q9UMS5 762 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 PCDHB1Q9Y5F3 818 aa14.91□□□□□ -0.02
CLN3-213ENST00000565047 ADAMTS20P59510 1910 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 A0A1W2PNU3 283 aaPredicted RBP14.9□□□□□ -0.02
CLN3-213ENST00000565047 NPIPB15A6NHN6 443 aaPredicted RBP14.9□□□□□ -0.02
CLN3-213ENST00000565047 ZNF487B1APH4 448 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 RASGRP1O95267 797 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 MAP3K6O95382 1288 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 FUCA1P04066 466 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 KDELR1P24390 212 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 CCNCP24863 283 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 VIPR1P32241 457 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 BLKP51451 505 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 NR0B2Q15466 257 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 HSD11B1LQ7Z5J1 315 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 TECPR1Q7Z6L1 1165 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 SDR16C5Q8N3Y7 309 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 FSTL5Q8N475 847 aaPredicted RBP14.9□□□□□ -0.02
CLN3-213ENST00000565047 KCTD6Q8NC69 237 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 RNF214Q8ND24 703 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 LRRN4Q8WUT4 740 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 WDR92Q96MX6 357 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 RNF157Q96PX1 679 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 SMIM14Q96QK8 99 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 IL12RB2Q99665 862 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 FGF22Q9HCT0 170 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 NT5MQ9NPB1 228 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 DTLQ9NZJ0 730 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 FAM208BQ5VWN6 2430 aa14.9□□□□□ -0.02
CLN3-213ENST00000565047 URB1O60287 2271 aaKnown RBP14.89□□□□□ -0.03
CLN3-213ENST00000565047 A0A0U1RQS6 177 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 PSMD11O00231 422 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 TNFRSF10CO14798 259 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 SOD1P00441 154 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 CPP00450 1065 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 KRT7P08729 469 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 HTR1BP28222 390 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 ARHGAP25P42331 645 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 SSR1P43307 286 aaKnown RBP14.89□□□□□ -0.03
CLN3-213ENST00000565047 NIPAL4Q0D2K0 466 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 MESDQ14696 234 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 IFI16Q16666 785 aaKnown RBP14.89□□□□□ -0.03
CLN3-213ENST00000565047 OGFOD3Q6PK18 319 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 C19orf48Q6RUI8 117 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 SARM1Q6SZW1 724 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 RFLNAQ6ZTI6 216 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 EFL1Q7Z2Z2 1120 aaKnown RBP14.89□□□□□ -0.03
CLN3-213ENST00000565047 TSPAN33Q86UF1 283 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 VSIG1Q86XK7 387 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 HID1Q8IV36 788 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 BBS5Q8N3I7 341 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 PLD5Q8N7P1 536 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 OR56A4Q8NGH8 313 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 DTD2Q96FN9 168 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 SEMA3CQ99985 751 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 TEX101Q9BY14 249 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 MRPL40Q9NQ50 206 aaKnown RBP14.89□□□□□ -0.03
CLN3-213ENST00000565047 KLQ9UEF7 1012 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 AMACRQ9UHK6 382 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 RABGEF1Q9UJ41 708 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 LHX6Q9UPM6 363 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 RAI2Q9Y5P3 530 aa14.89□□□□□ -0.03
CLN3-213ENST00000565047 CPED1A4D0V7 1026 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 NTN3O00634 580 aaPredicted RBP14.88□□□□□ -0.03
CLN3-213ENST00000565047 AKR1B10O60218 316 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 BRINP1O60477 761 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 ANXA6P08133 673 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 MMP2P08253 660 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 TEAD1P28347 426 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 GJC1P36383 396 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 EIF2S3P41091 472 aaKnown RBP14.88□□□□□ -0.03
CLN3-213ENST00000565047 ETV3P41162 512 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 PDX1P52945 283 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 DSC2Q02487 901 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 PTSQ03393 145 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 ELOCQ15369 112 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 COL28A1Q2UY09 1125 aa14.88□□□□□ -0.03
CLN3-213ENST00000565047 ARMC12Q5T9G4 340 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms