RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 USP45Q70EL2 814 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 DSG4Q86SJ6 1040 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 LRRC6Q86X45 466 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 TDRPQ86YL5 185 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 IL17RCQ8NAC3 791 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 PIP4K2CQ8TBX8 421 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 PKNOX2Q96KN3 472 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 DHRS4Q9BTZ2 278 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 PPANQ9NQ55 473 aaKnown RBP12.22□□□□□ -0.45
HERC1-205ENST00000559886 C20orf96Q9NUD7 363 aaPredicted RBP12.22□□□□□ -0.45
HERC1-205ENST00000559886 IL1RAPL1Q9NZN1 696 aa12.22□□□□□ -0.45
HERC1-205ENST00000559886 ZNF106Q9H2Y7 1883 aaKnown RBP12.22□□□□□ -0.45
HERC1-205ENST00000559886 TLDC2A0PJX2 215 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 C16orf96A6NNT2 1141 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 KPNA3O00505 521 aaPredicted RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 MAN2B1O00754 1011 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 CDH16O75309 829 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 VAPBO95292 243 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 MYZAPP0CAP1 466 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 TIMP2P16035 220 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 HMGCLP35914 325 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 SLCO1A2P46721 670 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 RASA2Q15283 850 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 LYSMD3Q7Z3D4 306 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 TRMT11Q7Z4G4 463 aaKnown RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 KCNMB4Q86W47 210 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 SLC44A1Q8WWI5 657 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 CDKL2Q92772 493 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 DNAJC1Q96KC8 554 aaKnown RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 PAFAH2Q99487 392 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 TMBIM4Q9HC24 238 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 NLE1Q9NVX2 485 aaPredicted RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 EURLQ9NYK6 297 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 NPIPB15A6NHN6 443 aaPredicted RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 GOLGA6L10A6NI86 522 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 SMIM23A6NLE4 172 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 UPK3BL1B0FP48 263 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 UPK3BL2E5RIL1 263 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 BUD23O43709 281 aaKnown RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 ADAM23O75077 832 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 CD72P21854 359 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 ITGB7P26010 798 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 GPS2Q13227 327 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 NAB1Q13506 487 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 PTPRCAPQ14761 206 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 HSP90AA5PQ58FG0 334 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 SDE2Q6IQ49 451 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 CTAGE3PQ8IX95 158 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 RIBC1Q8N443 379 aaPredicted RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 PPM1NQ8N819 430 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 OR4K2Q8NGD2 314 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 OR13C4Q8NGS5 318 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 EID2BQ96D98 161 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 C19orf43Q9BQ61 176 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 GPR63Q9BZJ6 419 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 RSPH9Q9H1X1 276 aaPredicted RBP12.21□□□□□ -0.45
HERC1-205ENST00000559886 ZFYVE1Q9HBF4 777 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 MED4Q9NPJ6 270 aa12.21□□□□□ -0.45
HERC1-205ENST00000559886 A0A0U1RQS6 177 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 C1orf232A0A0U1RR37 186 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 SLC7A4O43246 635 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 SYNCRIPO60506 623 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 RPP40O75818 363 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 KLF8O95600 359 aaPredicted RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 IL1BP01584 269 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 MSH2P43246 934 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 ARSDP51689 593 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 PRKCQQ04759 706 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 POM121L1PQ3SYA9 428 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 TEDDM1Q5T9Z0 273 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 ADGRD1Q6QNK2 874 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 CRTC1Q6UUV9 634 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 ZNF852Q6ZMS4 543 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 MARK2Q7KZI7 788 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 PARS2Q7L3T8 475 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 TTC7BQ86TV6 843 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 RASSF3Q86WH2 238 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 MMAAQ8IVH4 418 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 GOLGA6L1Q8N7Z2 621 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 HDAC10Q969S8 669 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 MRRFQ96E11 262 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 PGM2Q96G03 612 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 FAM53CQ9NYF3 392 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 IL17CQ9P0M4 197 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 ZFATQ9P243 1243 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 LGALS13Q9UHV8 139 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 C1QTNF3-AMACRE9PGA6 284 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 STX7O15400 261 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 RNF40O75150 1001 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 NFKBIAP25963 317 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 METAP1P53582 386 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 HSF5Q4G112 596 aaPredicted RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 TSPAN33Q86UF1 283 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 SLC26A11Q86WA9 606 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 CNTN4Q8IWV2 1026 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 TXNDC5Q8NBS9 432 aaKnown RBP12.2□□□□□ -0.46
HERC1-205ENST00000559886 DCAKDQ8WVC6 231 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 ARRDC3Q96B67 414 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 ARL8AQ96BM9 186 aa12.2□□□□□ -0.46
HERC1-205ENST00000559886 CDKN2AIPNLQ96HQ2 116 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms