RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TNFAIP3P21580 790 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 PSMA2P25787 234 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 CSRP3P50461 194 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 SCNN1BP51168 640 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 ZNF135P52742 658 aaPredicted RBP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 COPB1P53618 953 aaKnown RBP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 MAPK10P53779 464 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 UBXN1Q04323 297 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 IL10RBQ08334 325 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 ILF3Q12906 894 aaKnown RBP eCLIP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 HLTFQ14527 1009 aaKnown RBP eCLIP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 ACOX1Q15067 660 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 LINC00303Q3SY05 128 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 PHF19Q5T6S3 580 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 TMCO4Q5TGY1 634 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 SPECC1LQ69YQ0 1117 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 DPPA4Q7L190 304 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 SPRED1Q7Z699 444 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 MCOLN2Q8IZK6 566 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 LZTR1Q8N653 840 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 EXD3Q8N9H8 876 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 TSEN2Q8NCE0 465 aaKnown RBP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 ECHDC3Q96DC8 303 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 PDXPQ96GD0 296 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 SEMA3CQ99985 751 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 GSDMCQ9BYG8 508 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 TMEM168Q9H0V1 697 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 DHX35Q9H5Z1 703 aaKnown RBP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 WDR26Q9H7D7 661 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 SP110Q9HB58 689 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 CYP4F12Q9HCS2 524 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 PHPT1Q9NRX4 125 aaPredicted RBP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 PARVAQ9NVD7 372 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 FANCLQ9NW38 375 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 SEPT3Q9UH03 358 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 AP4E1Q9UPM8 1137 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 SIK3Q9Y2K2 1263 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 AHCTF1Q8WYP5 2266 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 PRAMEF33A0A0G2JMD5 474 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 PRSS38A1L453 326 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 LRRC10BA6NIK2 292 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 A8MX80 341 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 B4DGG1 531 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 DFFAO00273 331 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 HGSO14964 777 aaPredicted RBP9.19□□□□□ -0.94
HDDC3-204ENST00000559834 B4GAT1O43505 415 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 PRAMEF10O60809 474 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 CCNB1P14635 433 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 FERP16591 822 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 ERCC2P18074 760 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 ITIH1P19827 911 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 ALDH4A1P30038 563 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 HSPA9P38646 679 aaKnown RBP9.19□□□□□ -0.94
HDDC3-204ENST00000559834 RGRP47804 291 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 HCAR3P49019 387 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 AP1S1P61966 158 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 B4GALNT1Q00973 533 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 RALGDSQ12967 914 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 MAMLD1Q13495 774 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 AMZ1Q400G9 498 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 MAP9Q49MG5 647 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 PPP1R15BQ5SWA1 713 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 ATG14Q6ZNE5 492 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 RFX8Q6ZV50 586 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 ZFAND4Q86XD8 727 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 ZSWIM9Q86XI8 627 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 PSTKQ8IV42 348 aaKnown RBP9.19□□□□□ -0.94
HDDC3-204ENST00000559834 NDUFAF2Q8N183 169 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 BBS5Q8N3I7 341 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 GPBAR1Q8TDU6 330 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 EXTL1Q92935 676 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 ZNF599Q96NL3 588 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 PSKH2Q96QS6 385 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 LGR4Q9BXB1 951 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 FGF22Q9HCT0 170 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 MRPL40Q9NQ50 206 aaKnown RBP9.19□□□□□ -0.94
HDDC3-204ENST00000559834 STARD5Q9NSY2 213 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 TRNAU1APQ9NX07 287 aaKnown RBP9.19□□□□□ -0.94
HDDC3-204ENST00000559834 IL17BQ9UHF5 180 aa9.19□□□□□ -0.94
HDDC3-204ENST00000559834 LGALS16A8MUM7 142 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.18□□□□□ -0.94
HDDC3-204ENST00000559834 STMND1H3BQB6 276 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 AGRPO00253 132 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 TRAFD1O14545 582 aaPredicted RBP9.18□□□□□ -0.94
HDDC3-204ENST00000559834 ARHGAP6O43182 974 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 PRPSAP2O60256 369 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 FGF1P05230 155 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 MYCLP1P12525 358 aaPredicted RBP9.18□□□□□ -0.94
HDDC3-204ENST00000559834 KRT10P13645 584 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 GPR3P46089 330 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 ATP1A2P50993 1020 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 TRA2AQ13595 282 aaKnown RBP eCLIP9.18□□□□□ -0.94
HDDC3-204ENST00000559834 LBRQ14739 615 aaKnown RBP9.18□□□□□ -0.94
HDDC3-204ENST00000559834 KCTD16Q68DU8 428 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 SASS6Q6UVJ0 657 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 NYAP1Q6ZVC0 841 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 C17orf82Q86X59 251 aaPredicted RBP9.18□□□□□ -0.94
HDDC3-204ENST00000559834 DTX1Q86Y01 620 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 SLITRK4Q8IW52 837 aa9.18□□□□□ -0.94
HDDC3-204ENST00000559834 COL27A1Q8IZC6 1860 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 175.4 ms