RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ZNF460Q14592 562 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PDCD2Q16342 344 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 DDR2Q16832 855 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 C10orf120Q5SQS8 335 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 RAP1GAP2Q684P5 730 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 ALG1LQ6GMV1 187 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 FBXL22Q6P050 247 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CNSTQ6PJW8 725 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 RAB44Q7Z6P3 723 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 MFN1Q8IWA4 741 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 MFSD6LQ8IWD5 586 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 DSELQ8IZU8 1212 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 KDM1BQ8NB78 822 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 GPR150Q8NGU9 434 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CCDC124Q96CT7 223 aaKnown RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 SPDL1Q96EA4 605 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 L3HYPDHQ96EM0 354 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 RPRD1AQ96P16 312 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 CATSPER2Q96P56 530 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 WDR55Q9H6Y2 383 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 MEAF6Q9HAF1 191 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 UXTQ9UBK9 157 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 FBXO9Q9UK97 447 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 NUDT5Q9UKK9 219 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PSMD13Q9UNM6 376 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 PRG3Q9Y2Y8 225 aaPredicted RBP7.3□□□□□ -1.24
VPS13C-206ENST00000558338 VWA7Q9Y334 891 aa7.3□□□□□ -1.24
VPS13C-206ENST00000558338 SLC12A8A0AV02 714 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 F8W810 466 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 J3KR12 359 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 SDHDO14521 159 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 AIM2O14862 343 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 BUD23O43709 281 aaKnown RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 PRAMEF11O60813 436 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 RPP40O75818 363 aaKnown RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 GLP2RO95838 553 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 MMP2P08253 660 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 SERPINF2P08697 491 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 CCDC166P0CW27 439 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 HAPLN1P10915 354 aaPredicted RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 FGFR3P22607 806 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 GPR15P49685 360 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 CLCN2P51788 898 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 SLC10A7Q0GE19 358 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 C5orf22Q49AR2 442 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 ALFQ53S48 1182 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 SIRPB2Q5JXA9 342 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 RARS2Q5T160 578 aaKnown RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 RBM20Q5T481 1227 aaKnown RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 FAM171A1Q5VUB5 890 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 KBTBD6Q86V97 674 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 PDSS2Q86YH6 399 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 HPS6Q86YV9 775 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 PDZD8Q8NEN9 1154 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 OR13J1Q8NGT2 312 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 OR6P1Q8NGX9 317 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 RIN3Q8TB24 985 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 ARRDC2Q8TBH0 407 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 PYDC1Q8WXC3 89 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 LINC01599Q8WXQ3 324 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 OVCA2Q8WZ82 227 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 TOP1MTQ969P6 601 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 PSMG2Q969U7 264 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 HHIPL1Q96JK4 782 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 UBXN10Q96LJ8 280 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 BTBD9Q96Q07 612 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 TMEM175Q9BSA9 504 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 IER2Q9BTL4 223 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 MRPL9Q9BYD2 267 aaKnown RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 MRPL1Q9BYD6 325 aaKnown RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 SHCBP1LQ9BZQ2 653 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 ARHGAP39Q9C0H5 1083 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 ATXN3LQ9H3M9 355 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 Q9H521 79 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 INTS10Q9NVR2 710 aaKnown RBP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS13C-206ENST00000558338 EPS15L1Q9UBC2 864 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 PCDHB7Q9Y5E2 793 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 ANKRD36A6QL64 1941 aa7.29□□□□□ -1.24
VPS13C-206ENST00000558338 VWA8A3KMH1 1905 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 MTMR11A4FU01 709 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 PFDN6O15212 129 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 B4GALT3O60512 393 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 CNTN5O94779 1100 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 WISP3O95389 354 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-206ENST00000558338 CRTAMO95727 393 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 NDST3O95803 873 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 ATXN1LP0C7T5 689 aaKnown RBP7.28□□□□□ -1.24
VPS13C-206ENST00000558338 RAG1P15918 1043 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 IMPDH1P20839 514 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 TACR2P21452 398 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 FDXRP22570 491 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 CES1P23141 567 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 ME2P23368 584 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 SP100P23497 879 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-206ENST00000558338 OR1E1P30953 314 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 GRK4P32298 578 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 SUOXP51687 545 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 MAXP61244 160 aa7.28□□□□□ -1.24
VPS13C-206ENST00000558338 STX1BP61266 288 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms