RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TRPC4APQ8TEL6 797 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 ISL2Q96A47 359 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 PBXIP1Q96AQ6 731 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 TUBGCP3Q96CW5 907 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 PABPC5Q96DU9 382 aaKnown RBP12.37□□□□□ -0.43
LDLR-205ENST00000557933 ITCHQ96J02 903 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 DGCR6LQ9BY27 220 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 DUSP16Q9BY84 665 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 OSBPL6Q9BZF3 934 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 ADNPQ9H2P0 1102 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 MID1IP1Q9NPA3 183 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 SEMA4BQ9NPR2 832 aaPredicted RBP12.37□□□□□ -0.43
LDLR-205ENST00000557933 INIPQ9NRY2 104 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 IGSF5Q9NSI5 407 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 RBM22Q9NW64 420 aaKnown RBP eCLIP12.37□□□□□ -0.432e-7■■■■□ 25.4
LDLR-205ENST00000557933 MAP10Q9P2G4 905 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 DNAH14Q0VDD8 3507 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 CDH23Q9H251 3354 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 AGRPO00253 132 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 PIP5K1BO14986 540 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 IPO13O94829 963 aaKnown RBP12.37□□□□□ -0.43
LDLR-205ENST00000557933 SLC25A27O95847 323 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 HLA-DQB2P05538 268 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 SLC7A1P30825 629 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 MLLT10P55197 1068 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 SH3BP2P78314 561 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 FPGSQ05932 587 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 NAB1Q13506 487 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 RPS6KA2Q15349 733 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 SDHAF4Q5VUM1 108 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 NAPEPLDQ6IQ20 393 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 GPR180Q86V85 440 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 C2orf69Q8N8R5 385 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 SMYD1Q8NB12 490 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 TFAP2CQ92754 450 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 HDAC10Q969S8 669 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 PCED1BQ96HM7 432 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 HHIPL1Q96JK4 782 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 SMOQ99835 787 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 SLC38A7Q9NVC3 462 aa12.37□□□□□ -0.43
LDLR-205ENST00000557933 ZFC3H1O60293 1989 aaKnown RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 PRRC2BQ5JSZ5 2229 aaKnown RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 CASTOR2A6NHX0 329 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 TRPC5OSA6NMA1 111 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 UBXN8O00124 270 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 DAB1O75553 588 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 FAM163BP0C2L3 166 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 IL7RP16871 459 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 ATP5F1P24539 256 aaPredicted RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 PRDX3P30048 256 aaKnown RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 HSPA13P48723 471 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 MERTKQ12866 999 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 ITGADQ13349 1161 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 BFSP2Q13515 415 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 LAPTM5Q13571 262 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 CYP2A13Q16696 494 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 IMPG1Q17R60 797 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 UGT3A2Q3SY77 523 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 NANOGP8Q6NSW7 305 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 TAC4Q86UU9 113 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 ZDHHC17Q8IUH5 632 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 ZMIZ2Q8NF64 920 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 OR2T34Q8NGX1 318 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 OR2T3Q8NH03 318 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 GABPB2Q8TAK5 448 aaPredicted RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 ACOX2Q99424 681 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 PRDM8Q9NQV8 689 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 CMTM6Q9NX76 183 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 UTP6Q9NYH9 597 aaKnown RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 SUCOQ9UBS9 1254 aaKnown RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 VTI1BQ9UEU0 232 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 AXIN1O15169 862 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 FUCA1P04066 466 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 C8BP07358 591 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 MATN1P21941 496 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 ARCN1P48444 511 aaKnown RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 SNX16P57768 344 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 DENND5AQ6IQ26 1287 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 SLC27A1Q6PCB7 646 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 SLC15A3Q8IY34 581 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 ATPAF2Q8N5M1 289 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 PDZD8Q8NEN9 1154 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 TANKQ92844 425 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 KCNN1Q92952 543 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 PTERQ96BW5 349 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 TCF12Q99081 682 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 C16orf70Q9BSU1 422 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 RPF2Q9H7B2 306 aaKnown RBP12.36□□□□□ -0.43
LDLR-205ENST00000557933 ZFYVE28Q9HCC9 887 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 FADS3Q9Y5Q0 445 aa12.36□□□□□ -0.43
LDLR-205ENST00000557933 A8MU76 341 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 F8W810 466 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 XYLBO75191 536 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 ZNF189O75820 626 aaPredicted RBP12.35□□□□□ -0.43
LDLR-205ENST00000557933 IMPDH2P12268 514 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 GJA5P36382 358 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 TAF6P49848 677 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 STX1BP61266 288 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 GALNT18Q6P9A2 607 aa12.35□□□□□ -0.43
LDLR-205ENST00000557933 PIWIL4Q7Z3Z4 852 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms