RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C2P06681 752 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 OGNP20774 298 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 ARNTP27540 789 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 AVPR1AP37288 418 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 SLC26A3P40879 764 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 LEPRP48357 1165 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CSNK1DP48730 415 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CSRP3P50461 194 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 RAB10P61026 200 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CYP4F8P98187 520 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 STX3Q13277 289 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 TAF1AQ15573 450 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CHI3L2Q15782 390 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 TRMT5Q32P41 509 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 AAGABQ6PD74 315 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 RAPH1Q70E73 1250 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 KDELC2Q7Z4H8 507 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CLNKQ7Z7G1 428 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 RBM12BQ8IXT5 1001 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 ADAMTS19Q8TE59 1207 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 PPP4R1Q8TF05 950 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 DDI1Q8WTU0 396 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CYP2S1Q96SQ9 504 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 LBHD1Q9BQE6 289 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CORO1BQ9BR76 489 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 HTATIP2Q9BUP3 242 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 TDRD1Q9BXT4 1180 aaKnown RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 KIAA1522Q9P206 1035 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CFAP97Q9P2B7 532 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 COPG2Q9UBF2 871 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 SLC39A10Q9ULF5 831 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 SORCS3Q9UPU3 1222 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 ACOT9Q9Y305 439 aa12.7□□□□□ -0.38
SHMT2-229ENST00000557348 CHD5Q8TDI0 1954 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 PLXNA4Q9HCM2 1894 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-229ENST00000557348 FAM95CA0A1B0GW59 222 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 MUSKO15146 869 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 LDB2O43679 373 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 FKBP6O75344 327 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 RPP40O75818 363 aaKnown RBP12.69□□□□□ -0.38
SHMT2-229ENST00000557348 ZMPSTE24O75844 475 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 TMCC1O94876 653 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 PSMG1O95456 288 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 AHSGP02765 367 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 SPATA31D3P0C874 917 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 MYL4P12829 197 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 CPA3P15088 417 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 TCF3P15923 654 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 PSMA3P25788 255 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 TARSP26639 723 aaKnown RBP12.69□□□□□ -0.38
SHMT2-229ENST00000557348 SLC1A2P43004 574 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 SCNN1BP51168 640 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 SGSHP51688 502 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 PLK1P53350 603 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 MAP7Q14244 749 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 RCN2Q14257 317 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 GRM3Q14832 879 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 CYTH1Q15438 398 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 FASTKD1Q53R41 847 aaKnown RBP12.69□□□□□ -0.38
SHMT2-229ENST00000557348 PLPP4Q5VZY2 271 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 SPATA31D4Q6ZUB0 917 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 OR52K2Q8NGK3 314 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 B4GALNT2Q8NHY0 566 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 FIBINQ8TAL6 211 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 SPPL3Q8TCT6 385 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 POF1BQ8WVV4 589 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 PPP2R3CQ969Q6 453 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 OTUB2Q96DC9 234 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 SLC22A12Q96S37 553 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 TASP1Q9H6P5 420 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 ZDHHC7Q9NXF8 308 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 KCNK4Q9NYG8 393 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 CXXC1Q9P0U4 656 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-229ENST00000557348 TBC1D14Q9P2M4 693 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 OR51B4Q9Y5P0 310 aa12.69□□□□□ -0.38
SHMT2-229ENST00000557348 TNRC18O15417 2968 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-229ENST00000557348 A0A1W2PRU2 124 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 TTC36A6NLP5 189 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 TMEM114B3SHH9 223 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 LEFTY2O00292 366 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 ZNF197O14709 1029 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 GSC2O15499 205 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 SNNO75324 88 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-229ENST00000557348 HAUS5O94927 633 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 GLP2RO95838 553 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 GM2AP17900 193 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 MAGEA8P43361 318 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 ERVFC1P60507 584 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 RHOAP61586 193 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 ARF5P84085 180 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 BST1Q10588 318 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 CTC1Q2NKJ3 1217 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 DNAL1Q4LDG9 190 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 KLC3Q6P597 504 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 NET1Q7Z628 596 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-229ENST00000557348 CMC1Q7Z7K0 106 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 CILP2Q8IUL8 1156 aa12.68□□□□□ -0.38
SHMT2-229ENST00000557348 CMTM8Q8IZV2 173 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms