RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TPSAB1Q15661 275 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ZNF284Q2VY69 593 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 PLK5Q496M5 336 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 TMEM259Q4ZIN3 620 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 CERCAMQ5T4B2 595 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 IZUMO3Q5VZ72 239 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 LRRC66Q68CR7 880 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 DENND2CQ68D51 928 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 SLC36A4Q6YBV0 504 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 USP45Q70EL2 814 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ARMCX6Q7L4S7 300 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 LYSMD3Q7Z3D4 306 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 MAATS1Q7Z4T9 603 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 HSD11B1LQ7Z5J1 315 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 CCHCR1Q8TD31 782 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 BIRC7Q96CA5 298 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 LRRC45Q96CN5 670 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 LYSMD1Q96S90 227 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ORAI3Q9BRQ5 295 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ERP44Q9BS26 406 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 DPH5Q9H2P9 285 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 KDM4CQ9H3R0 1056 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 MAGEE1Q9HCI5 957 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 GOLGA6AQ9NYA3 693 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 TPX2Q9ULW0 747 aaKnown RBP12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ZNF711Q9Y462 761 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 WNT9AO14904 365 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 BUD23O43709 281 aaKnown RBP12.84□□□□□ -0.35
SHMT2-227ENST00000557269 FSBPO95073 299 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 C6P13671 934 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 MAOBP27338 520 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 CNR2P34972 360 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 SIM2Q14190 667 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-227ENST00000557269 PTPRCAPQ14761 206 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 DUPD1Q68J44 220 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 NAPEPLDQ6IQ20 393 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 CCDC70Q6NSX1 233 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 C8orf74Q6P047 294 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 NEK5Q6P3R8 708 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 PPP1R21Q6ZMI0 780 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 KDM7AQ6ZMT4 941 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 MICALCLQ6ZW33 695 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 CAND1Q86VP6 1230 aaKnown RBP12.84□□□□□ -0.35
SHMT2-227ENST00000557269 TRIM69Q86WT6 500 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 HORMAD1Q86X24 394 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 PPIL6Q8IXY8 311 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 NDUFAF2Q8N183 169 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 TTC30BQ8N4P2 665 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 CADM4Q8NFZ8 388 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 BLOC1S5Q8TDH9 187 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 CXorf40AQ8TE69 158 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 HSPA12BQ96MM6 686 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 PWWP2AQ96N64 755 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 C1QTNF2Q9BXJ5 285 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 RRAGDQ9NQL2 400 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-227ENST00000557269 GRHL1Q9NZI5 618 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 DMGDHQ9UI17 866 aaKnown RBP12.84□□□□□ -0.35
SHMT2-227ENST00000557269 KCTD3Q9Y597 815 aa12.84□□□□□ -0.35
SHMT2-227ENST00000557269 ABCA7Q8IZY2 2146 aa12.83□□□□□ -0.35
SHMT2-227ENST00000557269 C1orf232A0A0U1RR37 186 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 ESYT3A0FGR9 886 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 BHMG1C9JSJ3 638 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 RAD51BO15315 384 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 SLC31A1O15431 190 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 LATO43561 262 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 SEC31AO94979 1220 aaKnown RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 PAK4O96013 591 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 SLC4A1P02730 911 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 ELFN1P0C7U0 828 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 CYP2A6P11509 494 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 TNNT3P45378 269 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 CCR5P51681 352 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 STC1P52823 247 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 ITGA8P53708 1063 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 RPS21P63220 83 aaKnown RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 POU6F1Q14863 301 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 LPAL2Q16609 132 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 PMS2CLQ68D20 193 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 KIAA1161Q6NSJ0 714 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 HIBCHQ6NVY1 386 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 Q6ZVL8 140 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 CEP68Q76N32 757 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 LPCAT2Q7L5N7 544 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 TMC3Q7Z5M5 1100 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 TECPR1Q7Z6L1 1165 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 LINC00523Q86TU6 105 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 AGGF1Q8N302 714 aaeCLIP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 MCUQ8NE86 351 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 SNF8Q96H20 258 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 ZC3H10Q96K80 434 aaKnown RBP12.83□□□□□ -0.36
SHMT2-227ENST00000557269 COQ10AQ96MF6 247 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 PRRX2Q99811 253 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 SLC17A9Q9BYT1 436 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 ZFYVE1Q9HBF4 777 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 FZD3Q9NPG1 666 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 FAM86C1Q9NVL1 165 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 CA5BQ9Y2D0 317 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 ARL5AQ9Y689 179 aa12.83□□□□□ -0.36
SHMT2-227ENST00000557269 WDFY4Q6ZS81 3184 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms