RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 USP29Q9HBJ7 922 aa12.4□□□□□ -0.42
SYNE2-214ENST00000554928 PCDH9Q9HC56 1237 aa12.4□□□□□ -0.42
SYNE2-214ENST00000554928 GPR27Q9NS67 375 aa12.4□□□□□ -0.42
SYNE2-214ENST00000554928 TM7SF3Q9NS93 570 aa12.4□□□□□ -0.42
SYNE2-214ENST00000554928 TRMT1Q9NXH9 659 aaKnown RBP12.4□□□□□ -0.42
SYNE2-214ENST00000554928 TPX2Q9ULW0 747 aaKnown RBP12.4□□□□□ -0.42
SYNE2-214ENST00000554928 PHTF1Q9UMS5 762 aa12.4□□□□□ -0.42
SYNE2-214ENST00000554928 TRPM6Q9BX84 2022 aa12.4□□□□□ -0.42
SYNE2-214ENST00000554928 ASCC3Q8N3C0 2202 aaKnown RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 A0A1B0GTQ1 180 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 HACD1B0YJ81 288 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 K7ESM1 405 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 LZTS3O60299 673 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 HEXIM1O94992 359 aaKnown RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 PCCBP05166 539 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 C1SP09871 688 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 PIRTP0C851 137 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 RBP3P10745 1247 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 PFN3P60673 137 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 XRCC4Q13426 336 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 OLIG2Q13516 323 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 FZD2Q14332 565 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 PUM1Q14671 1186 aaKnown RBP eCLIP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 RPS6KA1Q15418 735 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 CDKN3Q16667 212 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 CRTC1Q6UUV9 634 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 KDELC1Q6UW63 502 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 KYAT3Q6YP21 454 aaKnown RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 BZW1Q7L1Q6 419 aaKnown RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 PIP4P1Q86T03 277 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 CBARPQ8N350 705 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 SCRN2Q96FV2 425 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 COQ10AQ96MF6 247 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 ELF4Q99607 663 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 GDF3Q9NR23 364 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 KLHL8Q9P2G9 620 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-214ENST00000554928 KLF15Q9UIH9 416 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 PPIL1Q9Y3C6 166 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 HS3ST3A1Q9Y663 406 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 TMEM131Q92545 1883 aa12.39□□□□□ -0.43
SYNE2-214ENST00000554928 A0A0J9YYE9 177 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 A6NNZ2 444 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 ENC1O14682 589 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 FPGTO14772 594 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 SDC3O75056 442 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 PMPCBO75439 489 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 TJP3O95049 919 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 CER1O95813 267 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 TRBC1P01850 177 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 ELFN1P0C7U0 828 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 CES1P23141 567 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 CXCR5P32302 372 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 ETV3P41162 512 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 CHRNA4P43681 627 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 GDF10P55107 478 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 POLR2LP62875 67 aaKnown RBP12.38□□□□□ -0.43
SYNE2-214ENST00000554928 ACOX1Q15067 660 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 SIX1Q15475 284 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-214ENST00000554928 LRRC66Q68CR7 880 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 DARS2Q6PI48 645 aaKnown RBP12.38□□□□□ -0.43
SYNE2-214ENST00000554928 IL27RAQ6UWB1 636 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 Q6ZVL8 140 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 PID1Q7Z2X4 250 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 KANSL1Q7Z3B3 1105 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 IQCHQ86VS3 1027 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 SLC13A5Q86YT5 568 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-214ENST00000554928 DENND6BQ8NEG7 585 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 SLC35B2Q8TB61 432 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 CCDC110Q8TBZ0 833 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 EID2BQ96D98 161 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 MLPHQ9BV36 600 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-214ENST00000554928 TCEAL2Q9H3H9 227 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-214ENST00000554928 CD84Q9UIB8 345 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 DNPEPQ9ULA0 475 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 OR1A2Q9Y585 309 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 LRRK1Q38SD2 2015 aa12.38□□□□□ -0.43
SYNE2-214ENST00000554928 CAPN8A6NHC0 703 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 SNPHO15079 494 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 SCAMP1O15126 338 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 KCNN4O15554 427 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 NRDCO43847 1150 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 CLDN7O95471 211 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 EPHA8P29322 1005 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-214ENST00000554928 CETN2P41208 172 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 CCT8P50990 548 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 WNT3AP56704 352 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 PTSQ03393 145 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 EIF2B5Q13144 721 aaKnown RBP12.37□□□□□ -0.43
SYNE2-214ENST00000554928 PDE1CQ14123 709 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-214ENST00000554928 INPP5AQ14642 412 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 LRRC14Q15048 493 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 DBX2Q6ZNG2 339 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 DGLUCYQ7Z3D6 616 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 TECPR1Q7Z6L1 1165 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 PRUNE1Q86TP1 453 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 CDKL3Q8IVW4 592 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-214ENST00000554928 C1orf54Q8WWF1 131 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 MRGPRX2Q96LB1 330 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 ALS2CR12Q96Q35 445 aa12.37□□□□□ -0.43
SYNE2-214ENST00000554928 AGAP2Q99490 1192 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms