RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 UBA2Q9UBT2 640 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-212ENST00000554467 MYOFQ9NZM1 2061 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 HEATR9A2RTY3 570 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 TMEM221A6NGB7 291 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 SNNO75324 88 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CKMP06732 381 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 GJA8P48165 433 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CDH4P55283 916 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 YBEYP58557 167 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CDK18Q07002 472 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 SFSWAPQ12872 951 aaKnown RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 DLG1Q12959 904 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 GSTA3Q16772 222 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 TPGS2Q68CL5 300 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 SLC22A17Q8WUG5 538 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 NXNL1Q96CM4 212 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 RMDN1Q96DB5 314 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 BTBD10Q9BSF8 475 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 LCHNA4D1U4 455 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 H0Y626 953 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 AP3B1O00203 1094 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 KLF11O14901 512 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 MAGEB3O15480 346 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 PFDN1O60925 122 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 LAG3P18627 525 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 MAGEA12P43365 314 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CSE1LP55060 971 aaKnown RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 PRAMEP78395 509 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 MSLNQ13421 630 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 TPGS1Q6ZTW0 290 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 GAREM2Q75VX8 874 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 TMC7Q7Z402 723 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 DDX53Q86TM3 631 aaKnown RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 SATL1Q86VE3 508 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CENPLQ8N0S6 344 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 ADAMTS19Q8TE59 1207 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 MYRFLQ96LU7 910 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CDK5RAP1Q96SZ6 601 aaKnown RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 OLFM1Q99784 485 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 HERC2P3Q9BVR0 1158 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 FNIP2Q9P278 1114 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 MYO9BQ13459 2157 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 A0A1W2PRU2 124 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 G3V2L1 256 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 K7ERQ8 282 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 BIRC5O15392 142 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 MAP3K7O43318 606 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 BAG2O95816 211 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 MT-CO1P00395 513 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CXorf57Q6NSI4 855 aaKnown RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 PIM3Q86V86 326 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 SPATA24Q86W54 205 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CFAP61Q8NHU2 1237 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 NMD3Q96D46 503 aaKnown RBP11.73□□□□□ -0.53
SHMT2-212ENST00000554467 CLPTM1LQ96KA5 538 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 C7orf26Q96N11 449 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 VPS45Q9NRW7 570 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 HCFC1R1Q9NWW0 138 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 SPO11Q9Y5K1 396 aa11.73□□□□□ -0.53
SHMT2-212ENST00000554467 B2RBV5 119 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 FCHO1O14526 889 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 LDB2O43679 373 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 SERPINF2P08697 491 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 PABPC4LP0CB38 370 aaKnown RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 PAMP19021 973 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 CD151P48509 253 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 ATXN7L2Q5T6C5 722 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 IZUMO2Q6UXV1 221 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 RPS27LQ71UM5 84 aaKnown RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 CLEC14AQ86T13 490 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 EFHBQ8N7U6 833 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 HIPK4Q8NE63 616 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 PLD4Q96BZ4 506 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 SORT1Q99523 831 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 MAGEH1Q9H213 219 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 IL21Q9HBE4 155 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 THAP1Q9NVV9 213 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.72□□□□□ -0.535e-12■■□□□ 11.4
SHMT2-212ENST00000554467 CLEC4EQ9ULY5 219 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 FCF1Q9Y324 198 aaKnown RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 NEMP2A6NFY4 417 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 GOLGA8CPA6NN73 597 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 MEI4A8MW99 385 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 CCL16O15467 120 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 CCDC22O60826 627 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 CLDN11O75508 207 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 F11P03951 625 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 CHRNGP07510 517 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 SBK3P0C264 359 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 MYL4P12829 197 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 UBAP2LQ14157 1087 aaKnown RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 C1orf53Q5VUE5 145 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 KIAA0930Q6ICG6 404 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 C2CD4AQ8NCU7 369 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 MPP4Q96JB8 637 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 C1QTNF1Q9BXJ1 281 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 ACE2Q9BYF1 805 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-212ENST00000554467 TM6SF2Q9BZW4 377 aa11.72□□□□□ -0.53
SHMT2-212ENST00000554467 EBF3Q9H4W6 596 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms