RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 KITP10721 976 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 PLK1P53350 603 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 AQP5P55064 265 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 DLG1Q12959 904 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 PTPRCAPQ14761 206 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 LIPMQ5VYY2 423 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 AFTPHQ6ULP2 937 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 TTC16Q8NEE8 873 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 MDGA1Q8NFP4 955 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 NDNQ99608 321 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 MRPL57Q9BQC6 102 aaKnown RBP26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 MTIF3Q9H2K0 278 aaKnown RBP26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 HCFC1R1Q9NWW0 138 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 HACD3Q9P035 362 aa26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 CPSF2Q9P2I0 782 aaKnown RBP26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 MARCOQ9UEW3 520 aaPredicted RBP26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 FCF1Q9Y324 198 aaKnown RBP26.4■■□□□ 1.82
CCDC88C-205ENST00000553403 LINC01553A4QN01 128 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 C5orf67F2Z3F1 127 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 TK2O00142 265 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 HNRNPCL1O60812 293 aaKnown RBP26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 LPOP22079 712 aaPredicted RBP26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 SLC26A3P40879 764 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 CSNK1DP48730 415 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 PGGT1BP53609 377 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 ASPHQ12797 758 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 LMAN2Q12907 356 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 CTC1Q2NKJ3 1217 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 TYSND1Q2T9J0 566 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 ARHGAP15Q53QZ3 475 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 LEMD2Q8NC56 503 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 SH3RF2Q8TEC5 729 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 MRPL46Q9H2W6 279 aaKnown RBP26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 MAN1C1Q9NR34 630 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 ARHGEF3Q9NR81 526 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 IGSF5Q9NSI5 407 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 INTS10Q9NVR2 710 aaKnown RBP26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 NUMBLQ9Y6R0 609 aa26.39■■□□□ 1.82
CCDC88C-205ENST00000553403 FZD6O60353 706 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 NQO1P15559 274 aaKnown RBP26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 SLC20A2Q08357 652 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 FAM83EQ2M2I3 478 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 AGAP9Q5VTM2 703 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 CMTM8Q8IZV2 173 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 OR4K2Q8NGD2 314 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 BHMTQ93088 406 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 GATA5Q9BWX5 397 aaPredicted RBP26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 XPR1Q9UBH6 696 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 HELZP42694 1942 aaKnown RBP26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 MOSPD3O75425 235 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 WISP3O95389 354 aaPredicted RBP26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 T-ENOLP0DO92 83 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 ALOX15P16050 662 aaPredicted RBP26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 ARRB2P32121 409 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 MAPK8P45983 427 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 GLRBP48167 497 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 KRT72Q14CN4 511 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 NAPRTQ6XQN6 538 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 TPGS1Q6ZTW0 290 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 LDB1Q86U70 411 aaPredicted RBP26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 MICAL1Q8TDZ2 1067 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 HEXDCQ8WVB3 486 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 INPP5DQ92835 1189 aa26.38■■□□□ 1.81
CCDC88C-205ENST00000553403 MT-CO1P00395 513 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 RB1P06400 928 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 HNRNPA1P09651 372 aaKnown RBP eCLIP26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 LTA4HP09960 611 aaKnown RBP26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 RASSF2P50749 326 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 DDX51Q8N8A6 666 aaKnown RBP eCLIP26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 TCEAL4Q96EI5 215 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 LMLNQ96KR4 655 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 TCF12Q99081 682 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 C17orf80Q9BSJ5 609 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 GPAMQ9HCL2 828 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 ABCB8Q9NUT2 735 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 DNAJC28Q9NX36 388 aa26.37■■□□□ 1.81
CCDC88C-205ENST00000553403 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 FCHO1O14526 889 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 CCDC22O60826 627 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 HSPA4LO95757 839 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 TARSP26639 723 aaKnown RBP26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 STC1P52823 247 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 SEMA3AQ14563 771 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 TEAD2Q15562 447 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 PLEKHG6Q3KR16 790 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 ATXN7L2Q5T6C5 722 aaPredicted RBP26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 KLC3Q6P597 504 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 ATG14Q6ZNE5 492 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 TTC30BQ8N4P2 665 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 UBXN10Q96LJ8 280 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 SMG9Q9H0W8 520 aaKnown RBP26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 LRMDAQ9H2I8 198 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 POPDC3Q9HBV1 291 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 PNPOQ9NVS9 261 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 CLEC4EQ9ULY5 219 aa26.36■■□□□ 1.81
CCDC88C-205ENST00000553403 RFPL2O75678 378 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 CSPG5O95196 566 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 RHOP08100 348 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 FDXRP22570 491 aa26.35■■□□□ 1.81
CCDC88C-205ENST00000553403 PMLP29590 882 aa26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms