RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 KIAA1024LP59773 190 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 DPYSL3Q14195 570 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 CNGA3Q16281 694 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 SLC18A3Q16572 532 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 DENND2CQ68D51 928 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 NCBP2-AS2Q69YL0 99 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 H2AFVQ71UI9 128 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 KCTD6Q8NC69 237 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 FAM71BQ8TC56 605 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 SCG3Q8WXD2 468 aaKnown RBP16.38■□□□□ 0.21
VPS29-207ENST00000549970 OR1E3Q8WZA6 343 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 NAT6Q93015 286 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 CRELD1Q96HD1 420 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 DEF6Q9H4E7 631 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 SYNDIG1Q9H7V2 258 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 UVRAGQ9P2Y5 699 aa16.38■□□□□ 0.21
VPS29-207ENST00000549970 TMEM202A6NGA9 273 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 CASC3O15234 703 aaKnown RBP16.37■□□□□ 0.21
VPS29-207ENST00000549970 CBFA2T2O43439 604 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 PROSCO94903 275 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 HOXB3P14651 431 aaPredicted RBP16.37■□□□□ 0.21
VPS29-207ENST00000549970 ITPKBP27987 946 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 VIPR1P32241 457 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 ACTN2P35609 894 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 TAS2R40P59535 323 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 GABREP78334 506 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 SKOR2Q2VWA4 1001 aaPredicted RBP16.37■□□□□ 0.21
VPS29-207ENST00000549970 TBC1D25Q3MII6 688 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 ZFYVE27Q5T4F4 411 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 SPECC1LQ69YQ0 1117 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 LRRC69Q6ZNQ3 347 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 GKN2Q86XP6 184 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 PELI3Q8N2H9 469 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 ARL10Q8N8L6 244 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 KYQ8NBH2 561 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 OR56A4Q8NGH8 313 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 TPCN2Q8NHX9 752 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 SNIP1Q8TAD8 396 aaKnown RBP16.37■□□□□ 0.21
VPS29-207ENST00000549970 SPOCK2Q92563 424 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 FGF11Q92914 225 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 NUS1Q96E22 293 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 COQ10AQ96MF6 247 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 CCDC3Q9BQI4 270 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 WDR26Q9H7D7 661 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 FGF22Q9HCT0 170 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 MRPL40Q9NQ50 206 aaKnown RBP16.37■□□□□ 0.21
VPS29-207ENST00000549970 MOSPD1Q9UJG1 213 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 PADI4Q9UM07 663 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 PHTF1Q9UMS5 762 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 GPR34Q9UPC5 381 aa16.37■□□□□ 0.21
VPS29-207ENST00000549970 COL27A1Q8IZC6 1860 aaPredicted RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 RRP8O43159 456 aaKnown RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 HEXIM1O94992 359 aaKnown RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 PGLSO95336 258 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 CYP2A6P11509 494 aaPredicted RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 KELP23276 732 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 NFKBIAP25963 317 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 GARSP41250 739 aaKnown RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 ITKQ08881 620 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 GALNT2Q10471 571 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 TRIM14Q14142 442 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 PAFAH1B3Q15102 231 aaKnown RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 ISXQ2M1V0 245 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 ANKRD20A8PQ5CZ79 823 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 RALGPS1Q5JS13 557 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 ARMC12Q5T9G4 340 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 PNCKQ6P2M8 343 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 LVRNQ6Q4G3 990 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 RBM44Q6ZP01 1051 aaKnown RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 LRRC49Q8IUZ0 686 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.36■□□□□ 0.21
VPS29-207ENST00000549970 OR8K1Q8NGG5 319 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 RBM15Q96T37 977 aaKnown RBP eCLIP16.36■□□□□ 0.21
VPS29-207ENST00000549970 DNAJC7Q99615 494 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 SEMA3CQ99985 751 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 ZNF670Q9BS34 389 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 LGR4Q9BXB1 951 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 ZNHIT6Q9NWK9 470 aaKnown RBP16.36■□□□□ 0.21
VPS29-207ENST00000549970 TTLL3Q9Y4R7 772 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 DGKBQ9Y6T7 804 aa16.36■□□□□ 0.21
VPS29-207ENST00000549970 GOLGA6CA6NDK9 693 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 GOLGA6BA6NDN3 693 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 NPIPB15A6NHN6 443 aaPredicted RBP16.35■□□□□ 0.21
VPS29-207ENST00000549970 AKR1B10O60218 316 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 KRT7P08729 469 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 GOLGA6DP0CG33 693 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 CTPS1P17812 591 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 LHCGRP22888 699 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 TRIM23P36406 574 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 ETV3P41162 512 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 CCDC173Q0VFZ6 552 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 ARHGEF7Q14155 803 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 PDK2Q15119 407 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 PTPRRQ15256 657 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 ASTE1Q2TB18 679 aaPredicted RBP16.35■□□□□ 0.21
VPS29-207ENST00000549970 C3orf38Q5JPI3 329 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 HSD11B1LQ7Z5J1 315 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 TAF8Q7Z7C8 310 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 TSPAN33Q86UF1 283 aa16.35■□□□□ 0.21
VPS29-207ENST00000549970 MAP7D3Q8IWC1 876 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms