RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SPATS2LQ9NUQ6 558 aaKnown RBP12.81□□□□□ -0.36
SCAF11-208ENST00000546534 NEU3Q9UQ49 428 aa12.81□□□□□ -0.36
SCAF11-208ENST00000546534 CHD5Q8TDI0 1954 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 TSPAN11A1L157 253 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 RHPN2P1A8MT19 583 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 CACNB4O00305 520 aaPredicted RBP12.8□□□□□ -0.36
SCAF11-208ENST00000546534 TNFRSF10CO14798 259 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 MTSS1O43312 755 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 RAD1O60671 282 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 LRIG2O94898 1065 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 PRKAR1AP10644 381 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 CDH5P33151 784 aaPredicted RBP12.8□□□□□ -0.36
SCAF11-208ENST00000546534 MMP12P39900 470 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 LIMK2P53671 638 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 NR1D2Q14995 579 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 CLPPQ16740 277 aaPredicted RBP12.8□□□□□ -0.36
SCAF11-208ENST00000546534 GBP6Q6ZN66 633 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 ZNF438Q7Z4V0 828 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 C17orf82Q86X59 251 aaPredicted RBP12.8□□□□□ -0.36
SCAF11-208ENST00000546534 ZNF354CQ86Y25 554 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 AGBL5Q8NDL9 886 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 CASKIN2Q8WXE0 1202 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 EXOC2Q96KP1 924 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 DDA1Q9BW61 102 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 LGR4Q9BXB1 951 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 RETREG1Q9H6L5 497 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 NOL6Q9H6R4 1146 aaKnown RBP12.8□□□□□ -0.36
SCAF11-208ENST00000546534 LHX3Q9UBR4 397 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 PLEKHB1Q9UF11 243 aaPredicted RBP12.8□□□□□ -0.36
SCAF11-208ENST00000546534 MOSPD1Q9UJG1 213 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 DNAJC12Q9UKB3 198 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 ATP6V1DQ9Y5K8 247 aa12.8□□□□□ -0.36
SCAF11-208ENST00000546534 UTP20O75691 2785 aaKnown RBP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 ZSCAN5CA6NGD5 496 aaPredicted RBP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 CAPN5O15484 640 aaPredicted RBP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 RECQL5O94762 991 aaPredicted RBP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 PRKCGP05129 697 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 FGF1P05230 155 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 KELP23276 732 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 MPSTP25325 297 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 PON1P27169 355 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 CD97P48960 835 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 TRA2AQ13595 282 aaKnown RBP eCLIP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 EXOC3L4Q17RC7 722 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 INO80DQ53TQ3 878 aaPredicted RBP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 NKAIN2Q5VXU1 208 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 ERAP2Q6P179 960 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 NRROSQ86YC3 692 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 EMC1Q8N766 993 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 CCDC112Q8NEF3 446 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 HCAR2Q8TDS4 363 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 APOBEC4Q8WW27 367 aaKnown RBP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 TBC1D31Q96DN5 1066 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 TIGD1Q96MW7 591 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 NCAPGQ9BPX3 1015 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 ASPSCR1Q9BZE9 553 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 PDCL3Q9H2J4 239 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 SUV39H2Q9H5I1 410 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 SIX2Q9NPC8 291 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 OCIAD1Q9NX40 245 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 SLC39A1Q9NY26 324 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 DACH1Q9UI36 760 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 HOOK1Q9UJC3 728 aaKnown RBP12.79□□□□□ -0.36
SCAF11-208ENST00000546534 PILRAQ9UKJ1 303 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 NBPF19A0A087WUL8 3843 aa12.79□□□□□ -0.36
SCAF11-208ENST00000546534 PRSS38A1L453 326 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 PRR19A6NJB7 356 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 BUB1BO60566 1050 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 ECEL1O95672 775 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 PLEKP08567 350 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 HOXC4P09017 264 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 CCNB1P14635 433 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 OAS2P29728 719 aaKnown RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 CSTF2P33240 577 aaKnown RBP eCLIP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 TRIM23P36406 574 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 CDC20Q12834 499 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 KLRB1Q12918 225 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 PAK1Q13153 545 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 CYTH1Q15438 398 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 CDO1Q16878 200 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 C15orf59Q2T9L4 293 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 DEFB109BQ30KR1 87 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 LACTB2Q53H82 288 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 BRAT1Q6PJG6 821 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 ARCQ7LC44 396 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 ATCAYQ86WG3 371 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 ZSWIM9Q86XI8 627 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 FAM71AQ8IYT1 594 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 NRSN1Q8IZ57 195 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 UNC5BQ8IZJ1 945 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 PELI3Q8N2H9 469 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 OR4D9Q8NGE8 314 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 ZDHHC1Q8WTX9 485 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 PATE1Q8WXA2 126 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 SPRY4Q9C004 299 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 SUDS3Q9H7L9 328 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 GPN2Q9H9Y4 310 aaPredicted RBP12.78□□□□□ -0.36
SCAF11-208ENST00000546534 TMEM9Q9P0T7 183 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 ATP8A1Q9Y2Q0 1164 aa12.78□□□□□ -0.36
SCAF11-208ENST00000546534 SPTBN1Q01082 2364 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms