RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 LIG3P49916 1009 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 KIAA1024LP59773 190 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 KRT85P78386 507 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 MTM1Q13496 603 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 PAPD7Q5XG87 772 aaKnown RBP15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 SLC30A9Q6PML9 568 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 TMEM110Q86TL2 294 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 PELI3Q8N2H9 469 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 CISD2Q8N5K1 135 aaKnown RBP15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 RBMXL3Q8N7X1 1067 aaKnown RBP15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 OR2AP1Q8NGE2 309 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 PTCD2Q8WV60 388 aaKnown RBP15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 MED15Q96RN5 788 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 OSBPL1AQ9BXW6 950 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 SCAND2PQ9GZW5 306 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 TKTL2Q9H0I9 626 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 COQ4Q9Y3A0 265 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 ANKRD36A6QL64 1941 aa15.43■□□□□ 0.06
CLSTN3-216ENST00000545663 MAP1AP78559 2803 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 TRBV23OR9-2A0A075B6M9 112 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 CACNB4O00305 520 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 TFE3P19532 575 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 NFKBIAP25963 317 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 HNRNPH3P31942 346 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 MAN1A1P33908 653 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 GNA12Q03113 381 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 PKP1Q13835 747 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 MAP7Q14244 749 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 STILQ15468 1287 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 NFIL3Q16649 462 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 OTUD1Q5VV17 481 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 SLC47A2Q86VL8 602 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 RUFY1Q96T51 708 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 DPYSL5Q9BPU6 564 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 CARS2Q9HA77 564 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 PIGVQ9NUD9 493 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 PHTF1Q9UMS5 762 aa15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 PCDHGA9Q9Y5G4 932 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-216ENST00000545663 POLEQ07864 2286 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 PRSS38A1L453 326 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 ARGFXA6NJG6 315 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 TNFRSF10CO14798 259 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 LRRTM2O43300 516 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 ZG16O60844 167 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 SRGAP2O75044 1071 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 GSRP00390 522 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 NOP2P46087 812 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 ZRSR2Q15696 482 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 LYSMD3Q7Z3D4 306 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 DRC7Q8IY82 874 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 ARHGEF2Q92974 986 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 HMCESQ96FZ2 354 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 PAGE5Q96GU1 130 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 PCDH12Q9NPG4 1184 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 KLHL3Q9UH77 587 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 SERTAD1Q9UHV2 236 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 PLEKHM1Q9Y4G2 1056 aa15.41■□□□□ 0.06
CLSTN3-216ENST00000545663 ZSCAN5CA6NGD5 496 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 INSIG1O15503 277 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 STX10O60499 249 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 LRCH4O75427 683 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 MAP3K6O95382 1288 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 TBXAS1P24557 533 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 RPL13P26373 211 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 STAT1P42224 750 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 SNRPD1P62314 119 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 CDK18Q07002 472 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 POLD3Q15054 466 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 PLEKHN1Q494U1 663 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 DCAF17Q5H9S7 520 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 FOXD4L5Q5VV16 416 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 TCERG1LQ5VWI1 586 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 STK32AQ8WU08 396 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 FOXD4L4Q8WXT5 416 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 PNPLA2Q96AD5 504 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 AHCYL2Q96HN2 611 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 ELMO2Q96JJ3 720 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 ING2Q9H160 280 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 ARHGEF38Q9NXL2 777 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 ZDHHC9Q9Y397 364 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 ZNF451Q9Y4E5 1061 aa15.4■□□□□ 0.06
CLSTN3-216ENST00000545663 IGLV3-10A0A075B6K4 115 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 TEX33O43247 280 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 CUTAO60888 179 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 XPAP23025 273 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 VARSP26640 1264 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 CASP14P31944 242 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 ITGA1P56199 1179 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 RNASE9P60153 205 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 RPS18P62269 152 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 GPLD1P80108 840 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 FOXM1Q08050 763 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 ILF3Q12906 894 aaKnown RBP eCLIP15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 DNASE1L3Q13609 305 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 AGERQ15109 404 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 LRRC31Q6UY01 552 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 SPNS3Q6ZMD2 512 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 ZNF783Q6ZMS7 281 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 CT55Q8WUE5 264 aa15.39■□□□□ 0.05
CLSTN3-216ENST00000545663 NCSTNQ92542 709 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms