RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 CHCHD3Q9NX63 227 aaKnown RBP13.78□□□□□ -0.2
VPS33A-208ENST00000543633 SNX10Q9Y5X0 201 aa13.78□□□□□ -0.2
VPS33A-208ENST00000543633 PDHXO00330 501 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 IRAK2O43187 625 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 SLC7A4O43246 635 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 PFDN1O60925 122 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 CLASP2O75122 1294 aaKnown RBP13.77□□□□□ -0.21
VPS33A-208ENST00000543633 HLA-DQB2P05538 268 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 KCNA5P22460 613 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 MRPL19P49406 292 aaKnown RBP13.77□□□□□ -0.21
VPS33A-208ENST00000543633 NDST2P52849 883 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 PGGT1BP53609 377 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 CRYBB1P53674 252 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF678Q5SXM1 525 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 KDELC1Q6UW63 502 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 ISLR2Q6UXK2 745 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 GPR141Q7Z602 305 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 RBM12BQ8IXT5 1001 aaKnown RBP13.77□□□□□ -0.21
VPS33A-208ENST00000543633 ARRDC4Q8NCT1 418 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF420Q8TAQ5 688 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-208ENST00000543633 PPWD1Q96BP3 646 aaKnown RBP13.77□□□□□ -0.21
VPS33A-208ENST00000543633 PTPN18Q99952 460 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 NOL11Q9H8H0 719 aaKnown RBP13.77□□□□□ -0.21
VPS33A-208ENST00000543633 PLGRKTQ9HBL7 147 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 ACTR3BQ9P1U1 418 aa13.77□□□□□ -0.21
VPS33A-208ENST00000543633 A0A1B0GTW7 788 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF839A8K0R7 811 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 AKAP10O43572 662 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 GPIP06744 558 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 FGF4P08620 206 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 ATP6V1B2P21281 511 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 IL10P22301 178 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 FGFR3P22607 806 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 SEPT6Q14141 434 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 PPP1R3AQ16821 1122 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 HECTD2Q5U5R9 776 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 CYHR1Q6ZMK1 362 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 ANKRD23Q86SG2 305 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 CLYBLQ8N0X4 340 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 SPATA6LQ8N4H0 392 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 FAM47BQ8NA70 645 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 TMEM40Q8WWA1 233 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 RNF34Q969K3 372 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 YTHDF1Q9BYJ9 559 aaKnown RBP13.76□□□□□ -0.21
VPS33A-208ENST00000543633 SLC25A51Q9H1U9 297 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 TSPYL2Q9H2G4 693 aaPredicted RBP13.76□□□□□ -0.21
VPS33A-208ENST00000543633 CYP4F12Q9HCS2 524 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 TNFRSF12AQ9NP84 129 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 AGPAT4Q9NRZ5 378 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 TMEM30AQ9NV96 361 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 GID8Q9NWU2 228 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 DHRS12A0PJE2 317 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 MYBPHLA2RUH7 354 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 WASH4PA8MWX3 477 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 SOCS2O14508 198 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 VPS4BO75351 444 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 TIPRLO75663 272 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 PSMA4P25789 261 aaKnown RBP13.76□□□□□ -0.21
VPS33A-208ENST00000543633 GRIA3P42263 894 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 HUNKP57058 714 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 NAA20P61599 178 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 HERVK_113P63132 956 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 ATP6AP1Q15904 470 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 CYP2R1Q6VVX0 501 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 ARHGAP36Q6ZRI8 547 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 FUNDC1Q8IVP5 155 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 BBS5Q8N3I7 341 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 FNDC8Q8TC99 324 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 CANT1Q8WVQ1 401 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 EDEM1Q92611 657 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 CENPNQ96H22 339 aaPredicted RBP13.76□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF419Q96HQ0 510 aaPredicted RBP13.76□□□□□ -0.21
VPS33A-208ENST00000543633 ERVK-6Q9BXR3 956 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 OSBPL6Q9BZF3 934 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 SLC39A8Q9C0K1 460 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 MFSD1Q9H3U5 465 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 POPDC3Q9HBV1 291 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 DNAAF2Q9NVR5 837 aaKnown RBP13.76□□□□□ -0.21
VPS33A-208ENST00000543633 LMCD1Q9NZU5 365 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 FIS1Q9Y3D6 152 aa13.76□□□□□ -0.21
VPS33A-208ENST00000543633 PTPRDP23468 1912 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 NME4O00746 187 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 IMPDH2P12268 514 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 FASP25445 335 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 SERPINH1P50454 418 aaKnown RBP13.75□□□□□ -0.21
VPS33A-208ENST00000543633 WNT3AP56704 352 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 UGT3A2Q3SY77 523 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 TBCELQ5QJ74 424 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 TMTC4Q5T4D3 741 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 SPRED1Q7Z699 444 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF354CQ86Y25 554 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 CILP2Q8IUL8 1156 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 MIER2Q8N344 545 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 SEPT8Q92599 483 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 CNDP2Q96KP4 475 aaKnown RBP13.75□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF512Q96ME7 567 aaPredicted RBP13.75□□□□□ -0.21
VPS33A-208ENST00000543633 DOK1Q99704 481 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 ADI1Q9BV57 179 aa13.75□□□□□ -0.21
VPS33A-208ENST00000543633 RBM22Q9NW64 420 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS33A-208ENST00000543633 VWA7Q9Y334 891 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms