RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ZNF564Q8TBZ8 553 aaPredicted RBP17.88■□□□□ 0.45
CLSTN3-214ENST00000542663 NUDT22Q9BRQ3 303 aa17.88■□□□□ 0.45
CLSTN3-214ENST00000542663 EPN3Q9H201 632 aa17.88■□□□□ 0.45
CLSTN3-214ENST00000542663 SPENQ96T58 3664 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-214ENST00000542663 IGHV5-10-1A0A0J9YXX1 117 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 PRSS38A1L453 326 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 CREB3O43889 395 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 GFPT2O94808 682 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 FUCA1P04066 466 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 GSCP56915 257 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 TPD52L1Q16890 204 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 SKIDA1Q1XH10 827 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 AMZ1Q400G9 498 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 BORAQ6PGQ7 559 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 WDR59Q6PJI9 974 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 FAM114A1Q8IWE2 563 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 MLKLQ8NB16 471 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 GPBAR1Q8TDU6 330 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 ECHDC3Q96DC8 303 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 TUBGCP5Q96RT8 1024 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 LRRC19Q9H756 370 aa17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 UTP20O75691 2785 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-214ENST00000542663 ZNF106Q9H2Y7 1883 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 NBASA2RRP1 2371 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 LRRK2Q5S007 2527 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 HGSO14964 777 aaPredicted RBP17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 CCP110O43303 1012 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 PRAMEF11O60813 436 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 FGF1P05230 155 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 KRT3P12035 628 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 UNGP13051 313 aaPredicted RBP17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 CCNB1P14635 433 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 GPD1P21695 349 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 KELP23276 732 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 CD1CP29017 333 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 ALDH4A1P30038 563 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 CSNK1DP48730 415 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 POLE2P56282 527 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 UBAP2LQ14157 1087 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 CFAP58Q5T655 872 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 AFMIDQ63HM1 303 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 SRLQ86TD4 932 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 TSEN2Q8NCE0 465 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 KIAA1524Q8TCG1 905 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 CCDC74BQ96LY2 380 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 NSMCE3Q96MG7 304 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 TAAR9Q96RI9 348 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 PCDHB18PQ96TA0 734 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 GANQ9H2C0 597 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 MOSPD1Q9UJG1 213 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 FZD10Q9ULW2 581 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 PCDHGA3Q9Y5H0 932 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 ST14Q9Y5Y6 855 aa17.86■□□□□ 0.45
CLSTN3-214ENST00000542663 CLEC18AA5D8T8 446 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 ELFN1P0C7U0 828 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 LIFP15018 202 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 UGT1A3P35503 534 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 STAT1P42224 750 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 KCNAB2Q13303 367 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 PNCKQ6P2M8 343 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 CLEC18BQ6UXF7 455 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 DPPA4Q7L190 304 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 CLEC18CQ8NCF0 446 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 ZDHHC1Q8WTX9 485 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 PATE1Q8WXA2 126 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 WDR26Q9H7D7 661 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 ATP13A3Q9H7F0 1226 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 CATSPERBQ9H7T0 1116 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 AKAP7Q9P0M2 348 aaPredicted RBP17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 B3GALT1Q9Y5Z6 326 aa17.85■□□□□ 0.45
CLSTN3-214ENST00000542663 TCRBV5S1A1TA0A578 114 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 A8MX80 341 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 PES1O00541 588 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 ECEL1O95672 775 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 SERPINA4P29622 427 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 ATP1A2P50993 1020 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 LIMK2P53671 638 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 JAM2P57087 298 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 CLPPQ16740 277 aaPredicted RBP17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 TSR1Q2NL82 804 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 SCYL2Q6P3W7 929 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 C3orf20Q8ND61 904 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 PTCD2Q8WV60 388 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 CELF6Q96J87 481 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 SELENOOQ9BVL4 669 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 CDH19Q9H159 772 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 CARS2Q9HA77 564 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 TAAR2Q9P1P5 351 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 SEPT3Q9UH03 358 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 TUBD1Q9UJT1 453 aa17.84■□□□□ 0.45
CLSTN3-214ENST00000542663 SIGLEC16A6NMB1 481 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 RHPN2P1A8MT19 583 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 TRAFD1O14545 582 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 FGF10O15520 208 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 TEX33O43247 280 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 CEACAM5P06731 702 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 MYCLP1P12525 358 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 AK4P27144 223 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 CSF2RBP32927 897 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 KLK7P49862 253 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms