RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 CCDC78A2IDD5 438 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 NPIPB15A6NHN6 443 aaPredicted RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 UPK3BL1B0FP48 263 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 UPK3BL2E5RIL1 263 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 E7ESA3 106 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 NDC80O14777 642 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 BUD23O43709 281 aaKnown RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 PPFIA2O75334 1257 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 MLNP12872 115 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 AOC1P19801 751 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 C5AR1P21730 350 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 P2RY2P41231 377 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 TNNT3P45378 269 aaPredicted RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 GRIA4P48058 902 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 PXNP49023 591 aaPredicted RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 NPY2RP49146 381 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 DGKEP52429 567 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 ARL4CP56559 192 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 RPL26P61254 145 aaKnown RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 FAM193AP78312 1265 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 PDIA2Q13087 525 aaKnown RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 PTPRCAPQ14761 206 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 HIF1AQ16665 826 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 CDKN3Q16667 212 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 UGP2Q16851 508 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 TMEM31Q5JXX7 168 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 UBAP2Q5T6F2 1119 aaKnown RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 PIP5KL1Q5T9C9 394 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 FAM46CQ5VWP2 391 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 FBXL19Q6PCT2 694 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 BRAT1Q6PJG6 821 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 CRTC1Q6UUV9 634 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 CES3Q6UWW8 571 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 LYPD8Q6UX82 237 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 KIAA1324Q6UXG2 1013 aaKnown RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 ERN2Q76MJ5 926 aaKnown RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 TSPAN33Q86UF1 283 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 PDIK1LQ8N165 341 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 HDDC3Q8N4P3 179 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 BLOC1S5Q8TDH9 187 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 HCAR2Q8TDS4 363 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 RUBCNQ92622 972 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 SIPA1Q96FS4 1042 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 SCRN2Q96FV2 425 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 OMDQ99983 421 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 HDAC8Q9BY41 377 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 EPHX3Q9H6B9 360 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 FBRSQ9HAH7 460 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 POLMQ9NP87 494 aaPredicted RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 PCDH12Q9NPG4 1184 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 PRDM9Q9NQV7 894 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 CHRAC1Q9NRG0 131 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 BFARQ9NZS9 450 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 B4GALT6Q9UBX8 382 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 EBF1Q9UH73 591 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 RPL26L1Q9UNX3 145 aaKnown RBP9.37□□□□□ -0.91
DDX55-208ENST00000541259 ITM2BQ9Y287 266 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 GON4LQ3T8J9 2241 aa9.37□□□□□ -0.91
DDX55-208ENST00000541259 KMT2EQ8IZD2 1858 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 THADAQ6YHU6 1953 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 A0A1W2PQ67 120 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 SDR42E2A6NKP2 422 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 RNASEH2AO75792 299 aaKnown RBP9.36□□□□□ -0.91
DDX55-208ENST00000541259 DXOO77932 396 aaKnown RBP9.36□□□□□ -0.91
DDX55-208ENST00000541259 CLDN7O95471 211 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 DNTTP04053 509 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 ADRB3P13945 408 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 LHCGRP22888 699 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 ELK3P41970 407 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 MAGEA4P43358 317 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 NEK3P51956 506 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 TAS2R38P59533 333 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 POLR2LP62875 67 aaKnown RBP9.36□□□□□ -0.91
DDX55-208ENST00000541259 SEPT6Q14141 434 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 AGBL4Q5VU57 503 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 ANO7Q6IWH7 933 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 LYSMD3Q7Z3D4 306 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 FAM124AQ86V42 546 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 ZBED8Q8IZ13 594 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 PGBD3Q8N328 593 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 TTC30BQ8N4P2 665 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 TMEM105Q8N8V8 129 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 EIF1ADQ8N9N8 165 aaKnown RBP9.36□□□□□ -0.91
DDX55-208ENST00000541259 TSTD1Q8NFU3 115 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 GANCQ8TET4 914 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 PBXIP1Q96AQ6 731 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 EID2BQ96D98 161 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 PPP1R16AQ96I34 528 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 ZNF778Q96MU6 729 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 MCCC1Q96RQ3 725 aaPredicted RBP9.36□□□□□ -0.91
DDX55-208ENST00000541259 FMO2Q99518 471 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 FRMD8Q9BZ67 464 aaPredicted RBP9.36□□□□□ -0.91
DDX55-208ENST00000541259 TPSD1Q9BZJ3 242 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 FAM129AQ9BZQ8 928 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 PLAC1Q9HBJ0 212 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 MAGEE1Q9HCI5 957 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 DYRK4Q9NR20 520 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 FBXL12Q9NXK8 326 aa9.36□□□□□ -0.91
DDX55-208ENST00000541259 MTRF1LQ9UGC7 380 aaKnown RBP9.36□□□□□ -0.91
DDX55-208ENST00000541259 CHMP2BQ9UQN3 213 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms