RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PPP2R2BQ00005 443 aa8.78□□□□□ -1
YBX3-208ENST00000540447 FSCN1Q16658 493 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 VSTM1Q6UX27 236 aa8.78□□□□□ -1
YBX3-208ENST00000540447 MFSD7Q6UXD7 560 aa8.78□□□□□ -1
YBX3-208ENST00000540447 DCDC5Q6ZRR9 648 aa8.78□□□□□ -1
YBX3-208ENST00000540447 TRPV3Q8NET8 790 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PHF10Q8WUB8 498 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 AFG1LQ8WV93 481 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CREB3L1Q96BA8 519 aa8.78□□□□□ -1
YBX3-208ENST00000540447 DUSP9Q99956 384 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 TRIM62Q9BVG3 475 aa8.78□□□□□ -1
YBX3-208ENST00000540447 BCL2L14Q9BZR8 327 aa8.78□□□□□ -1
YBX3-208ENST00000540447 KLHL28Q9NXS3 571 aa8.78□□□□□ -1
YBX3-208ENST00000540447 KCNH4Q9UQ05 1017 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CA5BQ9Y2D0 317 aa8.78□□□□□ -1
YBX3-208ENST00000540447 ATP10BO94823 1461 aa8.78□□□□□ -1
YBX3-208ENST00000540447 NUPL2O15504 423 aaKnown RBP8.77□□□□□ -1
YBX3-208ENST00000540447 MT-ND1P03886 318 aa8.77□□□□□ -1
YBX3-208ENST00000540447 DNTTP04053 509 aa8.77□□□□□ -1
YBX3-208ENST00000540447 GNAZP19086 355 aa8.77□□□□□ -1
YBX3-208ENST00000540447 MCCD1P59942 119 aaPredicted RBP8.77□□□□□ -1
YBX3-208ENST00000540447 MTMR1Q13613 665 aa8.77□□□□□ -1
YBX3-208ENST00000540447 EPHA7Q15375 998 aa8.77□□□□□ -1
YBX3-208ENST00000540447 KCTD19Q17RG1 926 aaPredicted RBP8.77□□□□□ -1
YBX3-208ENST00000540447 CES3Q6UWW8 571 aa8.77□□□□□ -1
YBX3-208ENST00000540447 CADM2Q8N3J6 435 aa8.77□□□□□ -1
YBX3-208ENST00000540447 SVOPLQ8N434 492 aa8.77□□□□□ -1
YBX3-208ENST00000540447 URGCPQ8TCY9 931 aa8.77□□□□□ -1
YBX3-208ENST00000540447 ACTR10Q9NZ32 417 aa8.77□□□□□ -1
YBX3-208ENST00000540447 PDP1Q9P0J1 537 aaPredicted RBP8.77□□□□□ -1
YBX3-208ENST00000540447 ADAM28Q9UKQ2 775 aa8.77□□□□□ -1
YBX3-208ENST00000540447 PCDHA11Q9Y5I1 949 aa8.77□□□□□ -1
YBX3-208ENST00000540447 CLASP1Q7Z460 1538 aa8.77□□□□□ -1
YBX3-208ENST00000540447 KCNU1A8MYU2 1149 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 PRSS44E7EML9 344 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 ALOX15BO15296 676 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 RGS14O43566 566 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 POLR1AO95602 1720 aaPredicted RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 ITGB1P05556 798 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 XRCC1P18887 633 aaPredicted RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 SNRPFP62306 86 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 SNRPD2P62316 118 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 KLRC3Q07444 240 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 ZBTB6Q15916 424 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 MAPKAPK3Q16644 382 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 ASB18Q6ZVZ8 466 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 UBR7Q8N806 425 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 VCPIP1Q96JH7 1222 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 UCK2Q9BZX2 261 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CPNE5Q9HCH3 593 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 AGPAT3Q9NRZ7 376 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 TBC1D22BQ9NU19 505 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CFAP43Q8NDM7 1665 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 EI24O14681 340 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 PAPSS1O43252 624 aaPredicted RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 TXNL1O43396 289 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 PLA2G6O60733 806 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CAPN15O75808 1086 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 SLITRK5O94991 958 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CDK4P11802 303 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CD53P19397 219 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 OGNP20774 298 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 CD72P21854 359 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 DDX6P26196 483 aaKnown RBP eCLIP8.77□□□□□ -1.01
YBX3-208ENST00000540447 HTR2AP28223 471 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 SLC7A1P30825 629 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 FOXN2P32314 431 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 RBM34P42696 430 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 PITPNAQ00169 270 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CACNB2Q08289 660 aaPredicted RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 CBLBQ13191 982 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 RAB39AQ14964 217 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 NPTX1Q15818 432 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 C1orf94Q6P1W5 598 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 MCOLN2Q8IZK6 566 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 SLC15A4Q8N697 577 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 OR4C6Q8NH72 309 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 NLNQ9BYT8 704 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 KCND2Q9NZV8 630 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 UPB1Q9UBR1 384 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 GPR75-ASB3A0A0A6YYF3 556 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CHADO15335 359 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 SGTAO43765 313 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CSF2P04141 144 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CSH1P0DML2 217 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CSH2P0DML3 217 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 HARS2P49590 506 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 UGT2B15P54855 530 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 CSTF1Q05048 431 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 PCID2Q5JVF3 399 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 REP15Q6BDI9 236 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 DCP2Q8IU60 420 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 METTL25Q8N6Q8 603 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 HSFY1Q96LI6 401 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 PSKH2Q96QS6 385 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 C2orf49Q9BVC5 232 aaPredicted RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 MMP27Q9H306 513 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 PRDM8Q9NQV8 689 aa8.77□□□□□ -1.01
YBX3-208ENST00000540447 SUCOQ9UBS9 1254 aaKnown RBP8.77□□□□□ -1.01
YBX3-208ENST00000540447 ZNF69Q9UC07 566 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms