RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PRSS38A1L453 326 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ZNF185O15231 689 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 STX10O60499 249 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 NR3C1P04150 777 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 FYNP06241 537 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 GTF2H1P32780 548 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ENPEPQ07075 957 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 IL11RAQ14626 422 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 SKOR2Q2VWA4 1001 aaPredicted RBP9.19□□□□□ -0.94
USP28-205ENST00000537706 VWA5B1Q5TIE3 1220 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ERAP2Q6P179 960 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 PDILTQ8N807 584 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 FDCSPQ8NFU4 85 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 SH3KBP1Q96B97 665 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 C14orf79Q96F83 325 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 MED15Q96RN5 788 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 LHX9Q9NQ69 397 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ST7Q9NRC1 585 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 TRNAU1APQ9NX07 287 aaKnown RBP9.19□□□□□ -0.94
USP28-205ENST00000537706 DDIT4Q9NX09 232 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 ARHGEF38Q9NXL2 777 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 COX16Q9P0S2 106 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 COQ6Q9Y2Z9 468 aa9.19□□□□□ -0.94
USP28-205ENST00000537706 FCF1Q9Y324 198 aaKnown RBP9.19□□□□□ -0.94
USP28-205ENST00000537706 NAV3Q8IVL0 2385 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 HIVEP3Q5T1R4 2406 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 TMEM202A6NGA9 273 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 A6NL46 340 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 PPM1DO15297 605 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 KCNN4O15554 427 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 THAP12O43422 761 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 CALUO43852 315 aaPredicted RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 PLEKP08567 350 aaPredicted RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 EDN3P14138 238 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 ERCC5P28715 1186 aaPredicted RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 PTPN4P29074 926 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 OR1E1P30953 314 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 ETFBP38117 255 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 SYPL2Q5VXT5 272 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 GUF1Q8N442 669 aaKnown RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 ZNF808Q8N4W9 903 aaPredicted RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 FBXL13Q8NEE6 735 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 OR2AP1Q8NGE2 309 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 TMEM174Q8WUU8 243 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 SMAD5Q99717 465 aaKnown RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 NUDT9Q9BW91 350 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 SIK2Q9H0K1 926 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 EPB41L1Q9H4G0 881 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 SUDS3Q9H7L9 328 aaPredicted RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 KLHL3Q9UH77 587 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 FBXO2Q9UK22 296 aaPredicted RBP9.18□□□□□ -0.94
USP28-205ENST00000537706 HS3ST4Q9Y661 456 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 HIVEP1P15822 2718 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 NF1P21359 2839 aa9.18□□□□□ -0.94
USP28-205ENST00000537706 CROCCQ5TZA2 2017 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 CXorf51AA0A1B0GTR3 108 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ILVBLA1L0T0 632 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 F5H423 210 aaPredicted RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 FANCGO15287 622 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ZNF821O75541 412 aaPredicted RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 MAP3K6O95382 1288 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 PAEPP09466 180 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 TRIM49P0CI25 452 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 TRIM49CP0CI26 452 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ZNF28P17035 718 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 NDST2P52849 883 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 YWHAZP63104 245 aaKnown RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 PKP1Q13835 747 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 AGERQ15109 404 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 MYLK3Q32MK0 819 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 C5orf22Q49AR2 442 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 LRRC73Q5JTD7 316 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 CFAP58Q5T655 872 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ACBD5Q5T8D3 534 aaPredicted RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 CNNM4Q6P4Q7 775 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 SLC30A9Q6PML9 568 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 MED25Q71SY5 747 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 PLXDC1Q8IUK5 500 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ZADH2Q8N4Q0 377 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 TMEM102Q8N9M5 508 aaPredicted RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 OR6K2Q8NGY2 324 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 CLIC6Q96NY7 704 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 WDR26Q9H7D7 661 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 RAB20Q9NX57 234 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ZNHIT2Q9UHR6 403 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 A0A0D9SEW6 157 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 IPO13O94829 963 aaKnown RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 TMEM63AO94886 807 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 IGLV3-25P01717 112 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 STSP08842 583 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ANKRD34CP0C6C1 535 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 LPOP22079 712 aaPredicted RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 GKP32189 559 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 PTGIRP43119 386 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 MAPK9P45984 424 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 IRAK1P51617 712 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ZNF235Q14590 738 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 CNGA2Q16280 664 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 RPTNQ6XPR3 784 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 OR7D4Q8NG98 312 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms