RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 GLOD4Q9HC38 313 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 PNMA8BQ9ULN7 279 aaPredicted RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 RPL26L1Q9UNX3 145 aaKnown RBP13.02□□□□□ -0.33
VPS28-216ENST00000533806 CHKBQ9Y259 395 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 BTBD3Q9Y2F9 522 aa13.02□□□□□ -0.33
VPS28-216ENST00000533806 SPEGQ15772 3267 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 MED19A0JLT2 244 aaPredicted RBP13.01□□□□□ -0.33
VPS28-216ENST00000533806 A8MX80 341 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 YKT6O15498 198 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 FLRT2O43155 660 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 TJP3O95049 919 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 ALPIP09923 528 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 ELFN1P0C7U0 828 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 TRIM23P36406 574 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 ARRB1P49407 418 aaPredicted RBP13.01□□□□□ -0.33
VPS28-216ENST00000533806 NOVA1P51513 510 aaKnown RBP13.01□□□□□ -0.33
VPS28-216ENST00000533806 IL9RQ01113 521 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 OTUD4Q01804 1114 aaKnown RBP13.01□□□□□ -0.33
VPS28-216ENST00000533806 PTSQ03393 145 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 MEI1Q5TIA1 1274 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 CRTC1Q6UUV9 634 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 TECPR1Q7Z6L1 1165 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 GLRX5Q86SX6 157 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 TSPAN33Q86UF1 283 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 SLC25A45Q8N413 288 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS28-216ENST00000533806 PLA2G15Q8NCC3 412 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 RBM15Q96T37 977 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS28-216ENST00000533806 VAT1Q99536 393 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 USP29Q9HBJ7 922 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 PCDH9Q9HC56 1237 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 SEPT10Q9P0V9 454 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 KLF15Q9UIH9 416 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 PPP2R2CQ9Y2T4 447 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 TTLL3Q9Y4R7 772 aa13.01□□□□□ -0.33
VPS28-216ENST00000533806 CEP295Q9C0D2 2601 aa13□□□□□ -0.33
VPS28-216ENST00000533806 A0A0U1RQS6 177 aa13□□□□□ -0.33
VPS28-216ENST00000533806 TCRBV7S2A1N4TA0A589 114 aa13□□□□□ -0.33
VPS28-216ENST00000533806 CAPN8A6NHC0 703 aa13□□□□□ -0.33
VPS28-216ENST00000533806 ANKRD66B4E2M5 251 aa13□□□□□ -0.33
VPS28-216ENST00000533806 PSMD11O00231 422 aa13□□□□□ -0.33
VPS28-216ENST00000533806 LZTS3O60299 673 aaPredicted RBP13□□□□□ -0.33
VPS28-216ENST00000533806 NEBLO76041 1014 aa13□□□□□ -0.33
VPS28-216ENST00000533806 CSF2P04141 144 aa13□□□□□ -0.33
VPS28-216ENST00000533806 GIMD1P0DJR0 217 aa13□□□□□ -0.33
VPS28-216ENST00000533806 CTPS1P17812 591 aa13□□□□□ -0.33
VPS28-216ENST00000533806 RBL1P28749 1068 aa13□□□□□ -0.33
VPS28-216ENST00000533806 EIF2B5Q13144 721 aaKnown RBP13□□□□□ -0.33
VPS28-216ENST00000533806 INPP5AQ14642 412 aa13□□□□□ -0.33
VPS28-216ENST00000533806 SUZ12Q15022 739 aaKnown RBP13□□□□□ -0.33
VPS28-216ENST00000533806 QPCTQ16769 361 aa13□□□□□ -0.33
VPS28-216ENST00000533806 N4BP2L1Q5TBK1 243 aaPredicted RBP13□□□□□ -0.33
VPS28-216ENST00000533806 USP45Q70EL2 814 aa13□□□□□ -0.33
VPS28-216ENST00000533806 HSD11B1LQ7Z5J1 315 aa13□□□□□ -0.33
VPS28-216ENST00000533806 PTAR1Q7Z6K3 402 aaPredicted RBP13□□□□□ -0.33
VPS28-216ENST00000533806 GATAD2AQ86YP4 633 aa13□□□□□ -0.33
VPS28-216ENST00000533806 ZNF567Q8N184 647 aa13□□□□□ -0.33
VPS28-216ENST00000533806 PELI3Q8N2H9 469 aa13□□□□□ -0.33
VPS28-216ENST00000533806 SPATA22Q8NHS9 363 aa13□□□□□ -0.33
VPS28-216ENST00000533806 FUBP1Q96AE4 644 aaKnown RBP13□□□□□ -0.33
VPS28-216ENST00000533806 FCRL5Q96RD9 977 aa13□□□□□ -0.33
VPS28-216ENST00000533806 GORASP1Q9BQQ3 440 aa13□□□□□ -0.33
VPS28-216ENST00000533806 KCNF1Q9H3M0 494 aa13□□□□□ -0.33
VPS28-216ENST00000533806 SLC32A1Q9H598 525 aa13□□□□□ -0.33
VPS28-216ENST00000533806 C10orf88Q9H8K7 445 aa13□□□□□ -0.33
VPS28-216ENST00000533806 LZTFL1Q9NQ48 299 aa13□□□□□ -0.33
VPS28-216ENST00000533806 TRHDEQ9UKU6 1024 aa13□□□□□ -0.33
VPS28-216ENST00000533806 WASF3Q9UPY6 502 aa13□□□□□ -0.33
VPS28-216ENST00000533806 PCNX2A6NKB5 2137 aa13□□□□□ -0.33
VPS28-216ENST00000533806 SHROOM3Q8TF72 1996 aa13□□□□□ -0.33
VPS28-216ENST00000533806 LOC285095A0A1B0GVY8 99 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 DKK1O94907 266 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 MT-CYBP00156 380 aaPredicted RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 ADRB1P08588 477 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 HOXC4P09017 264 aaPredicted RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 RBP3P10745 1247 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 CYP2A6P11509 494 aaPredicted RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 NME1P15531 152 aaKnown RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 NFKB1P19838 968 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 CA4P22748 312 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 DGKAP23743 735 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 NFKBIAP25963 317 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 CETN2P41208 172 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 GRK6P43250 576 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 FOXK2Q01167 660 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 MTM1Q13496 603 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 PDE1CQ14123 709 aaPredicted RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 ESRP1Q6NXG1 681 aaKnown RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 PNCKQ6P2M8 343 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 KDELC1Q6UW63 502 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 RFLNAQ6ZTI6 216 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 NLRP8Q86W28 1048 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 RAVER1Q8IY67 606 aaKnown RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 EID2BQ96D98 161 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 DTD2Q96FN9 168 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 OXNAD1Q96HP4 312 aaPredicted RBP12.99□□□□□ -0.33
VPS28-216ENST00000533806 APOOQ9BUR5 198 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 TLR10Q9BXR5 811 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 TOR4AQ9NXH8 423 aa12.99□□□□□ -0.33
VPS28-216ENST00000533806 KCTD5Q9NXV2 234 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms