RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ENO4A6NNW6 628 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 M0QZQ0 153 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 GTPBP1O00178 669 aaKnown RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 DNPH1O43598 174 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 EIF5BO60841 1220 aaKnown RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 ANXA6P08133 673 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 RFPL3SP0C7P2 107 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 TGFB3P10600 412 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 ACTN1P12814 892 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 HOXB2P14652 356 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 KLRK1P26718 216 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 ADD2P35612 726 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 CCR10P46092 362 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 POLE2P56282 527 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 SIM2Q14190 667 aaPredicted RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 CSHL1Q14406 222 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 CCDC152Q4G0S7 254 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 TCEAL5Q5H9L2 206 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 N4BP2L1Q5TBK1 243 aaPredicted RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 COPS6Q7L5N1 327 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 RPAINQ86UA6 219 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 LRRTM4Q86VH4 590 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 RASGRP3Q8IV61 690 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 SLC44A2Q8IWA5 706 aaPredicted RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 DDIASQ8IXT1 998 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 SRFBP1Q8NEF9 429 aaKnown RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 SPATA3Q8NHX4 192 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 THAP4Q8WY91 577 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 USP13Q92995 863 aaPredicted RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 EME1Q96AY2 570 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 MPP4Q96JB8 637 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 GLT1D1Q96MS3 346 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 RBM38Q9H0Z9 239 aaKnown RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 MFSD1Q9H3U5 465 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 HIPK3Q9H422 1215 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 TASP1Q9H6P5 420 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 EPS8L2Q9H6S3 715 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 TXNRD2Q9NNW7 524 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 SAYSD1Q9NPB0 183 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 FSCN3Q9NQT6 498 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 HELLSQ9NRZ9 838 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 CD207Q9UJ71 328 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 FEM1BQ9UK73 627 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 MTUS1Q9ULD2 1270 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 PCDHB7Q9Y5E2 793 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 DMXL2Q8TDJ6 3036 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 RALGAPA2Q2PPJ7 1873 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 DNHD1Q96M86 4753 aa4.17□□□□□ -1.74
CD44-235ENST00000532339 RFX7Q2KHR2 1363 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 GXYLT2A0PJZ3 443 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 EME2A4GXA9 379 aaPredicted RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 J3KTA2 159 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 RHODO00212 210 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 PGK1P00558 417 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 CD4P01730 458 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 NGFRP08138 427 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 CHRNB1P11230 501 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 AOC1P19801 751 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 CIITAP33076 1130 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 ALDH18A1P54886 795 aaKnown RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 CCL23P55773 120 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 AP2B1P63010 937 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 IRX3P78415 501 aaPredicted RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 ZXDBP98169 803 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 GAD2Q05329 585 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 EFR3AQ14156 821 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 MAPRE1Q15691 268 aaKnown RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 TAF12Q16514 161 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 BTBD16Q32M84 506 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 INTS11Q5TA45 600 aaKnown RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 NUGGCQ68CJ6 796 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 C16orf89Q6UX73 402 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 TMTC1Q8IUR5 882 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 CPOQ8IVL8 374 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 FTSJ3Q8IY81 847 aaKnown RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 NAXEQ8NCW5 288 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 RSC1A1Q92681 617 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 FAR2Q96K12 515 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 PPM1MQ96MI6 270 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 CTAGE1Q96RT6 745 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 PYM1Q9BRP8 204 aaKnown RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 ABHD14AQ9BUJ0 271 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 PHF7Q9BWX1 381 aaPredicted RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 AAMDCQ9H7C9 122 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 KCNK9Q9NPC2 374 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 SELENONQ9NZV5 590 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 KIF17Q9P2E2 1029 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 DBF4Q9UBU7 674 aaPredicted RBP4.16□□□□□ -1.74
CD44-235ENST00000532339 DAPP1Q9UN19 280 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 LAMP3Q9UQV4 416 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 CRYL1Q9Y2S2 319 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 RAI2Q9Y5P3 530 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 UMODL1Q5DID0 1318 aa4.16□□□□□ -1.74
CD44-235ENST00000532339 A0A0U1RQG5 324 aaPredicted RBP4.15□□□□□ -1.75
CD44-235ENST00000532339 LINC01553A4QN01 128 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FAM90A18PA6NE21 464 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FAM90A16PA6NEW6 464 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 HMX3A6NHT5 357 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 A6NNC1 897 aa4.15□□□□□ -1.75
CD44-235ENST00000532339 FAM90A9PA6NNJ1 464 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms