RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 MYBL1P10243 752 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 CYP19A1P11511 503 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 PTPN2P17706 415 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 EDN2P20800 178 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 CHRNA5P30532 468 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 HOXA13P31271 388 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 STIP1P31948 543 aaKnown RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 THPOP40225 353 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ARHGAP25P42331 645 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 HOXA4Q00056 320 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 GALNT3Q14435 633 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 NAB2Q15742 525 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ME3Q16798 604 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 C15orf59Q2T9L4 293 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 ALG11Q2TAA5 492 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ASTE1Q2TB18 679 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 COL28A1Q2UY09 1125 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 FAM153CQ494X1 144 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ZNF449Q6P9G9 518 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ZNF474Q6S9Z5 364 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 MFSD6Q6ZSS7 791 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 CHST3Q7LGC8 479 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 CCDC186Q7Z3E2 898 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 KBTBD6Q86V97 674 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 TDRPQ86YL5 185 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 THNSL1Q8IYQ7 743 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ZNF713Q8N859 430 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 Q8NFD4 153 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 OR6J1Q8NGC5 347 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 OR52N4Q8NGI2 321 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 TMEM170AQ8WVE7 144 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 FAR1Q8WVX9 515 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 KAT2BQ92831 832 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 SYAP1Q96A49 352 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 TBC1D31Q96DN5 1066 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ARHGEF26Q96DR7 871 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 PABPC5Q96DU9 382 aaKnown RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 FRG2BQ96QU4 278 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 BBS4Q96RK4 519 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 DESI2Q9BSY9 194 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 IFIH1Q9BYX4 1025 aaKnown RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 NUF2Q9BZD4 464 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 TRIM6Q9C030 488 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 OSGEPL1Q9H4B0 414 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 PLK3Q9H4B4 646 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 PDZD7Q9H5P4 517 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 RANGRFQ9HD47 186 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 ARHGEF38Q9NXL2 777 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 C5AR2Q9P296 337 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ABI3Q9P2A4 366 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 SEC63Q9UGP8 760 aaKnown RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 TBK1Q9UHD2 729 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 RASAL2Q9UJF2 1139 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ANAPC5Q9UJX4 755 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 SLC8A2Q9UPR5 921 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 LOC100509620A0A075B734 347 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 FAM237AA0A1B0GTK4 181 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 FAM90A8PA6NJQ4 464 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 FAM25EA8MYX2 175 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 FAM157AC9JC47 383 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 NPIPB11E5RHQ5 1161 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 HCRTR2O43614 444 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 SLC25A17O43808 307 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 TGDSO95455 350 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 NFATC1O95644 943 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 MT-CYBP00156 380 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 FAM90A13PP0C7W8 464 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 FAM90A24PP0C7X0 464 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 IL7RP16871 459 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 IFNAR1P17181 557 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 IL4RP24394 825 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 KLRC2P26717 231 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 YWHAQP27348 245 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 HOXD9P28356 352 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 PTGER1P34995 402 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 MAGEA8P43361 318 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 HDAC4P56524 1084 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 BPIFB3P59826 476 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 MRPS5P82675 430 aaKnown RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 RBP5P82980 135 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 BFSP1Q12934 665 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 BAATQ14032 418 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 DRAP1Q14919 205 aaPredicted RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 PGM5Q15124 567 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 ASIC2Q16515 512 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 CCDC142Q17RM4 750 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 ODF3L2Q3SX64 289 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 SUPT20HL1Q3ZLR7 823 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 IGSF11Q5DX21 431 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 ZNF628Q5EBL2 1059 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 UNC5DQ6UXZ4 953 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 ZNF788Q6ZQV5 615 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 MCM10Q7L590 875 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 PLPPR4Q7Z2D5 763 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 TBC1D26Q86UD7 250 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 WDR5BQ86VZ2 330 aa3.38□□□□□ -1.87
CD44-229ENST00000528672 DHX40Q8IX18 779 aaKnown RBP3.38□□□□□ -1.87
CD44-229ENST00000528672 ZCCHC9Q8N567 271 aaKnown RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms