RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 C10orf88Q9H8K7 445 aa11.53□□□□□ -0.56
VCAN-212ENST00000515397 MRPL40Q9NQ50 206 aaKnown RBP11.53□□□□□ -0.56
VCAN-212ENST00000515397 CD84Q9UIB8 345 aa11.53□□□□□ -0.56
VCAN-212ENST00000515397 LCMT1Q9UIC8 334 aa11.53□□□□□ -0.56
VCAN-212ENST00000515397 PHTF1Q9UMS5 762 aa11.53□□□□□ -0.56
VCAN-212ENST00000515397 CPED1A4D0V7 1026 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 GOLGA6CA6NDK9 693 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 GOLGA6BA6NDN3 693 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 TMEM202A6NGA9 273 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 AQP9O43315 295 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 SOCS5O75159 536 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 DKK1O94907 266 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 HEXIM1O94992 359 aaKnown RBP11.52□□□□□ -0.57
VCAN-212ENST00000515397 PRLP01236 227 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 PROS1P07225 676 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 GOLGA6DP0CG33 693 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 PECAM1P16284 738 aaPredicted RBP11.52□□□□□ -0.57
VCAN-212ENST00000515397 TSHRP16473 764 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 MX2P20592 715 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 VIPR1P32241 457 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 CD86P42081 329 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 CDKN2BP42772 138 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 PPARDQ03181 441 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 ZNF211Q13398 564 aaPredicted RBP11.52□□□□□ -0.57
VCAN-212ENST00000515397 CDKN3Q16667 212 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 ALG11Q2TAA5 492 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 LRRC38Q5VT99 294 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 TIGD7Q6NT04 549 aaPredicted RBP11.52□□□□□ -0.57
VCAN-212ENST00000515397 CRTC1Q6UUV9 634 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 SPOCD1Q6ZMY3 1216 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 Q6ZVL8 140 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 TMPRSS7Q7RTY8 843 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 DAAM2Q86T65 1068 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 ZSCAN30Q86W11 494 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 TMTC1Q8IUR5 882 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 TPCN2Q8NHX9 752 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 FAM174AQ8TBP5 190 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 SCRN2Q96FV2 425 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 APOLD1Q96LR9 279 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 COQ10AQ96MF6 247 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 AGAP3Q96P47 875 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 DESI2Q9BSY9 194 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 LRRC61Q9BV99 259 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 POLR1EQ9GZS1 481 aaKnown RBP11.52□□□□□ -0.57
VCAN-212ENST00000515397 BRD8Q9H0E9 1235 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 DDX56Q9NY93 547 aaKnown RBP11.52□□□□□ -0.57
VCAN-212ENST00000515397 GOLGA6AQ9NYA3 693 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 TRIM10Q9UDY6 481 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 APOBEC3BQ9UH17 382 aaKnown RBP11.52□□□□□ -0.57
VCAN-212ENST00000515397 MOSPD1Q9UJG1 213 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 LRRK1Q38SD2 2015 aa11.52□□□□□ -0.57
VCAN-212ENST00000515397 ASXL3Q9C0F0 2248 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 ANKRD36A6QL64 1941 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 LY6G6EA0A0G2JKS1 128 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 YY2O15391 372 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 FZD6O60353 706 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 CST8O60676 142 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 RFPL3O75679 317 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 MMP2P08253 660 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 PIRTP0C851 137 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 JUPP14923 745 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 EPHB1P54762 984 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 SRP54P61011 504 aaKnown RBP11.51□□□□□ -0.57
VCAN-212ENST00000515397 YPEL5P62699 121 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 SKOR1P84550 965 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 PPIDQ08752 370 aaKnown RBP11.51□□□□□ -0.57
VCAN-212ENST00000515397 PTK2BQ14289 1009 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 HS1BP3Q53T59 392 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 AADACL2Q6P093 401 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 PNCKQ6P2M8 343 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 MACC1Q6ZN28 852 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 CCDC50Q8IVM0 306 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 SFTPA2Q8IWL1 248 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 CBARPQ8N350 705 aaPredicted RBP11.51□□□□□ -0.57
VCAN-212ENST00000515397 LPCAT1Q8NF37 534 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 SPATA22Q8NHS9 363 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 MDM1Q8TC05 714 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 OR1E3Q8WZA6 343 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 HDAC11Q96DB2 347 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 IFT43Q96FT9 208 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 PDXPQ96GD0 296 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 ZNF830Q96NB3 372 aaPredicted RBP11.51□□□□□ -0.57
VCAN-212ENST00000515397 RBM15Q96T37 977 aaKnown RBP eCLIP11.51□□□□□ -0.57
VCAN-212ENST00000515397 HERPUD2Q9BSE4 406 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 SLC13A1Q9BZW2 595 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 UBP1Q9NZI7 540 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 SIRPGQ9P1W8 387 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 GULP1Q9UBP9 304 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 ZMIZ1Q9ULJ6 1067 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 U3KQA8 63 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 APC2O95996 2303 aa11.51□□□□□ -0.57
VCAN-212ENST00000515397 PLXNB3Q9ULL4 1909 aa11.5□□□□□ -0.57
VCAN-212ENST00000515397 FAM221BA6H8Z2 402 aa11.5□□□□□ -0.57
VCAN-212ENST00000515397 TRABD2BA6NFA1 517 aa11.5□□□□□ -0.57
VCAN-212ENST00000515397 NEMP2A6NFY4 417 aa11.5□□□□□ -0.57
VCAN-212ENST00000515397 H3BM21 787 aa11.5□□□□□ -0.57
VCAN-212ENST00000515397 TAF4O00268 1085 aa11.5□□□□□ -0.57
VCAN-212ENST00000515397 ZRANB2O95218 330 aaKnown RBP eCLIP11.5□□□□□ -0.57
VCAN-212ENST00000515397 CLDN7O95471 211 aa11.5□□□□□ -0.57
VCAN-212ENST00000515397 FUCA1P04066 466 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms