RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MARK1Q9P0L2 795 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF70Q9UC06 446 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 RBAK-RBAKDNI3L0D1 243 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 RFXANKO14593 260 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 NUAK1O60285 661 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 GH1P01241 217 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 GRK5P34947 590 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 RAB12Q6IQ22 244 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 FOXR2Q6PJQ5 311 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 FAM43BQ6ZT52 329 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 KCTD8Q6ZWB6 473 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CAPN10Q9HC96 672 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 URADA6NGE7 173 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 H3BM21 787 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 TBX1O43435 398 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 NDUFB5O43674 189 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 IFNA21P01568 189 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CD2P06729 351 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 BPGMP07738 259 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 HMBSP08397 361 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 MKRN4PQ13434 485 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 STARD3Q14849 445 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CRY1Q16526 586 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 CFAP206Q8IYR0 622 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 DNAJB3Q8WWF6 145 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 UFD1Q92890 307 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 MTIF3Q9H2K0 278 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 ETNK2Q9NVF9 386 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF214Q9UL59 606 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 TLL2Q9Y6L7 1015 aa11.25□□□□□ -0.61
LIMCH1-217ENST00000512946 FRMPD4Q14CM0 1322 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 RAD17O75943 681 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 CEBPAP49715 358 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 RAB10P61026 200 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 CDKL1Q00532 357 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TRIM28Q13263 835 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 MFSD14CQ5VZR4 134 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 OVOS1Q6IE37 1185 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 FAM171BQ6P995 826 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 USP49Q70CQ1 688 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TMEM192Q8IY95 271 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 CPSF7Q8N684 471 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 PCDH19Q8TAB3 1148 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 LENG9Q96B70 501 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 APBA2Q99767 749 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 RIOK2Q9BVS4 552 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 DENND2DQ9H6A0 471 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 RANBP3Q9H6Z4 567 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 UNKLQ9H9P5 680 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TM9SF3Q9HD45 589 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 NT5MQ9NPB1 228 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 KLQ9UEF7 1012 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ADGRE2Q9UHX3 823 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 DNPEPQ9ULA0 475 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 BARX2Q9UMQ3 279 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TFR2Q9UP52 801 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 KCNE2Q9Y6J6 123 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 EFCAB9A8MZ26 197 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 UGT2B17O75795 530 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 FGFR1P11362 822 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 POU6F1Q14863 301 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 GLYATQ6IB77 296 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 GJB7Q6PEY0 223 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 DSG4Q86SJ6 1040 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TMEM126BQ8IUX1 230 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 PTGR2Q8N8N7 351 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF431Q8TF32 576 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 PCDHGB1Q9Y5G3 927 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 CNTNAP5Q8WYK1 1306 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 PIGBOS1A0A0B4J2F0 54 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 PAX3P23760 479 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 RBL1P28749 1068 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 RPL9P32969 192 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ASMTP46597 345 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TTPAP49638 278 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 CLK2P49760 499 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 POLR2LP62875 67 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ADGRE1Q14246 886 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 LPCAT4Q643R3 524 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 LLGL2Q6P1M3 1020 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TMC8Q8IU68 726 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ELMOD2Q8IZ81 293 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 SEC14L1Q92503 715 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TMEM143Q96AN5 459 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 AIF1LQ9BQI0 150 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF350Q9GZX5 532 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ELL3Q9HB65 397 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 AQP12BA6NM10 295 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 M0R036 132 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 FGF10O15520 208 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 GMFGO60234 142 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ACSL4O60488 711 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 MTHFRP42898 656 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 PLD1Q13393 1074 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 PDIA6Q15084 440 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 ZNF697Q5TEC3 545 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 AQP12AQ8IXF9 295 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 SPERTQ8NA61 448 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 TCTEX1D2Q8WW35 142 aa11.24□□□□□ -0.61
LIMCH1-217ENST00000512946 C12orf43Q96C57 262 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms