RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 KCNK7Q9Y2U2 307 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 PRSS21Q9Y6M0 314 aa3.8□□□□□ -1.8
VPS50-219ENST00000495039 EBAG9O00559 213 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 PLRG1O43660 514 aaKnown RBP3.79□□□□□ -1.8
VPS50-219ENST00000495039 RGS11O94810 467 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 ADAP00813 363 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 HLA-DOBP13765 273 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 HSD3B1P14060 373 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 HNRNPH1P31943 449 aaKnown RBP3.79□□□□□ -1.8
VPS50-219ENST00000495039 CCT5P48643 541 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 ACTR2P61160 394 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 SMAD1Q15797 465 aaKnown RBP3.79□□□□□ -1.8
VPS50-219ENST00000495039 WDR73Q6P4I2 378 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 GJB7Q6PEY0 223 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 LCTLQ6UWM7 567 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 ANKRD18AQ8IVF6 992 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 SUGP1Q8IWZ8 645 aaKnown RBP3.79□□□□□ -1.8
VPS50-219ENST00000495039 ODF3L1Q8IXM7 274 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 CPXCR1Q8N123 301 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 SRBD1Q8N5C6 995 aaKnown RBP3.79□□□□□ -1.8
VPS50-219ENST00000495039 SPPL3Q8TCT6 385 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 TMEM170AQ8WVE7 144 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 THAP4Q8WY91 577 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 ZSCAN31Q96LW9 406 aaPredicted RBP3.79□□□□□ -1.8
VPS50-219ENST00000495039 EGFL8Q99944 293 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 CSTL1Q9H114 145 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 CHODLQ9H9P2 273 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 PLEKHA2Q9HB19 425 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 TMEM160Q9NX00 188 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 HDAC6Q9UBN7 1215 aa3.79□□□□□ -1.8
VPS50-219ENST00000495039 DVL1O14640 695 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 ATP2C2O75185 946 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 NDUFB4O95168 129 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 WEE2P0C1S8 567 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 RXRAP19793 462 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 GPTP24298 496 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 USP8P40818 1118 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 MCM2P49736 904 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 DVL1P1P54792 670 aaPredicted RBP3.78□□□□□ -1.8
VPS50-219ENST00000495039 BIRC3Q13489 604 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 SLC35E4Q6ICL7 350 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 CEACAM20Q6UY09 585 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 SMAP1Q8IYB5 467 aaPredicted RBP3.78□□□□□ -1.8
VPS50-219ENST00000495039 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.78□□□□□ -1.8
VPS50-219ENST00000495039 TMEM57Q8N5G2 664 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 DNAAF1Q8NEP3 725 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 BBS10Q8TAM1 723 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 RILPL2Q969X0 211 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 ZNF524Q96C55 264 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 CDCA5Q96FF9 252 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 LRRC1Q9BTT6 524 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 NPLQ9BXD5 320 aaPredicted RBP3.78□□□□□ -1.8
VPS50-219ENST00000495039 TWSG1Q9GZX9 223 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 G6PC2Q9NQR9 355 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 OGFRQ9NZT2 677 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 LUZP4Q9P127 313 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 RALYQ9UKM9 306 aaKnown RBP3.78□□□□□ -1.8
VPS50-219ENST00000495039 GPR52Q9Y2T5 361 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 DGKBQ9Y6T7 804 aa3.78□□□□□ -1.8
VPS50-219ENST00000495039 TYW5A2RUC4 315 aaKnown RBP3.77□□□□□ -1.81
VPS50-219ENST00000495039 B9A039 149 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 DHX16O60231 1041 aaKnown RBP3.77□□□□□ -1.81
VPS50-219ENST00000495039 TK1P04183 234 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 INHBAP08476 426 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 CSF1P09603 554 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 PAX1P15863 534 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 TMPOP42166 694 aaKnown RBP3.77□□□□□ -1.81
VPS50-219ENST00000495039 PAPOLAP51003 745 aaKnown RBP3.77□□□□□ -1.81
VPS50-219ENST00000495039 GOLGA8FQ08AF8 430 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 GRIK2Q13002 908 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 FBXO47Q5MNV8 452 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 CCNYL2Q5T2Q4 361 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 GFRALQ6UXV0 394 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 RASGRP2Q7LDG7 609 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 KMT5CQ86Y97 462 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 C2CD5Q86YS7 1000 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 LURAP1LQ8IV03 231 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 MAGEC3Q8TD91 643 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 ERGIC1Q969X5 290 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 PYM1Q9BRP8 204 aaKnown RBP3.77□□□□□ -1.81
VPS50-219ENST00000495039 HERC2P3Q9BVR0 1158 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 UBXN6Q9BZV1 441 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 C17orf75Q9HAS0 396 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 NOD2Q9HC29 1040 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 HCFC1R1Q9NWW0 138 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 FEM1BQ9UK73 627 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 DERAQ9Y315 318 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 PCDHGB5Q9Y5G0 923 aa3.77□□□□□ -1.81
VPS50-219ENST00000495039 AKR1B15C9JRZ8 316 aaPredicted RBP3.76□□□□□ -1.81
VPS50-219ENST00000495039 PCDH7O60245 1069 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 PATE4P0C8F1 98 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 NR1D1P20393 614 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 LUMP51884 338 aaPredicted RBP3.76□□□□□ -1.81
VPS50-219ENST00000495039 EFR3AQ14156 821 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 ARHGEF6Q15052 776 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 TAF12Q16514 161 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 KCNT1Q5JUK3 1230 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 PDSS1Q5T2R2 415 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 BSPRYQ5W0U4 402 aa3.76□□□□□ -1.81
VPS50-219ENST00000495039 CES5AQ6NT32 575 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms