RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 HTR3AP46098 478 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 RNF144AP50876 292 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TPD52P55327 224 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 SIK1P57059 783 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 OR2B6P58173 313 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 DEFA1P59665 94 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 DEFA3P59666 94 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 POU6F2P78424 691 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 GPLD1P80108 840 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 GBE1Q04446 702 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PPP3CAQ08209 521 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 COX10Q12887 443 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 STX5Q13190 355 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 RAB33AQ14088 237 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PCLAFQ15004 111 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 POLD3Q15054 466 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CLVS2Q5SYC1 327 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 RBM20Q5T481 1227 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 N4BP2L1Q5TBK1 243 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 MROH9Q5TGP6 573 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TATDN1Q6P1N9 297 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CCBE1Q6UXH8 406 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 BBS12Q6ZW61 710 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CYS1Q717R9 158 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 ZNF720Q7Z2F6 126 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 VN1R5Q7Z5H4 357 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 DHFR2Q86XF0 187 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 WDR49Q8IV35 697 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 C10orf107Q8IVU9 208 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 LGI2Q8N0V4 545 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CCDC185Q8N715 623 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 OR7A2PQ8NGA2 310 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PSMA8Q8TAA3 256 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 URGCPQ8TCY9 931 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 SLC7A3Q8WY07 619 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 KAT5Q92993 513 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 MUL1Q969V5 352 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PLD4Q96BZ4 506 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 LRRC39Q96DD0 335 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TOE1Q96GM8 510 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TMEM80Q96HE8 168 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 FBXL20Q96IG2 436 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 ST6GAL2Q96JF0 529 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 ZFYVE19Q96K21 471 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CNTNAP3BQ96NU0 1288 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 OR52B2Q96RD2 323 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CAMKK2Q96RR4 588 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CPXM1Q96SM3 734 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 ACO2Q99798 780 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 SH2D3AQ9BRG2 576 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 RSRP1Q9BUV0 290 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 IDI2Q9BXS1 227 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TEX13BQ9BXU2 312 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 RHOBTB2Q9BYZ6 727 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CNTNAP3Q9BZ76 1288 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TRIM15Q9C019 465 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PCDHAC1Q9H158 963 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 UPF3AQ9H1J1 476 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 DPEP3Q9H4B8 488 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 ZNF385DQ9H6B1 395 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 RAVER2Q9HCJ3 691 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 VAT1LQ9HCJ6 419 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 WASH6PQ9NQA3 447 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 KCNQ5Q9NR82 932 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 ABCB10Q9NRK6 738 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 AGPAT4Q9NRZ5 378 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PAK1IP1Q9NWT1 392 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PAQR5Q9NXK6 330 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 SMPD3Q9NY59 655 aaPredicted RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 IL37Q9NZH6 218 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 IP6K2Q9UHH9 426 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 SARDHQ9UL12 918 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 EMCNQ9ULC0 261 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 GRIP1Q9Y3R0 1128 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PCDHGA7Q9Y5G6 932 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CAMTA1Q9Y6Y1 1673 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 LAMB2P55268 1798 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 A0A0G2JMP0 313 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 A0A1W2PNR3 127 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PABPN1LA6NDY0 278 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 HMX3A6NHT5 357 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 FAM159BA6NKW6 160 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 AQP12BA6NM10 295 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 E7ENX8 843 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 SLCO1B7G3V0H7 640 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 H3BUI4 141 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TOR1BO14657 336 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TBX3O15119 743 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 CHADO15335 359 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 HDAC3O15379 428 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TLR3O15455 904 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 ARHGEF9O43307 516 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 NDUFS2O75306 463 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 USP12O75317 370 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 H2AFYO75367 372 aaKnown RBP4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PAGE1O75459 146 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 PRKD3O94806 890 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 SNX4O95219 450 aa4.78□□□□□ -1.64
SNRNP40-206ENST00000489853 TRIM16O95361 564 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms