RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SLC25A18Q9H1K4 315 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 IL25Q9H293 177 aa6.06□□□□□ -1.44
USP40-213ENST00000483216 LSM4Q9Y4Z0 139 aaKnown RBP6.06□□□□□ -1.44
USP40-213ENST00000483216 CPED1A4D0V7 1026 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 BCAT2O15382 392 aaPredicted RBP6.05□□□□□ -1.44
USP40-213ENST00000483216 GAGE7O76087 117 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 HOXB5P09067 269 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 GAGE12FP0CL80 117 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 GAGE12GP0CL81 117 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 GAGE12IP0CL82 117 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 SHMT1P34896 483 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 CPOXP36551 454 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 TUBA1BP68363 451 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 ECT2LQ008S8 904 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 NEXNQ0ZGT2 675 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 GAGE1Q13065 139 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 GAGE4Q13068 117 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 NFATC4Q14934 902 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 LINGO2Q7L985 606 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 SLC46A3Q7Z3Q1 461 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 ZC3HC1Q86WB0 502 aaKnown RBP6.05□□□□□ -1.44
USP40-213ENST00000483216 TDRPQ86YL5 185 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 AGBL3Q8NEM8 1001 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 WASF1Q92558 559 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 RTP4Q96DX8 246 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 FAM84BQ96KN1 310 aaPredicted RBP6.05□□□□□ -1.44
USP40-213ENST00000483216 SLCO5A1Q9H2Y9 848 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 C6orf106Q9H6K1 298 aaPredicted RBP6.05□□□□□ -1.44
USP40-213ENST00000483216 BPIFA1Q9NP55 256 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 OCIAD1Q9NX40 245 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 SETD5Q9C0A6 1442 aa6.05□□□□□ -1.44
USP40-213ENST00000483216 ZBED9Q6R2W3 1325 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 USP17L23D6RBM5 183 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 PPP1R3DO95685 299 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 IGHV4-30-4P0DP06 118 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 HNRNPH1P31943 449 aaKnown RBP6.04□□□□□ -1.44
USP40-213ENST00000483216 COMPP49747 757 aaPredicted RBP6.04□□□□□ -1.44
USP40-213ENST00000483216 GNAQP50148 359 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 EIF3BP55884 814 aaKnown RBP6.04□□□□□ -1.44
USP40-213ENST00000483216 DDX10Q13206 875 aaKnown RBP6.04□□□□□ -1.44
USP40-213ENST00000483216 GSTA3Q16772 222 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 MTSS1LQ765P7 747 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 CADM4Q8NFZ8 388 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 SLITRK1Q96PX8 696 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 WDR26Q9H7D7 661 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 TAS2R10Q9NYW0 307 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 CDC14AQ9UNH5 594 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 LRP12Q9Y561 859 aa6.04□□□□□ -1.44
USP40-213ENST00000483216 UTYO14607 1347 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 IQGAP2Q13576 1575 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 IGLV5-37A0A075B6J1 123 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 EME2A4GXA9 379 aaPredicted RBP6.03□□□□□ -1.44
USP40-213ENST00000483216 LRRC53A6NM62 1247 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 IFNL4K9M1U5 179 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 SEC14L5O43304 696 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 ZIC3O60481 467 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 PEX5P50542 639 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 RAD23BP54727 409 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 CASP6P55212 293 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 TBX2Q13207 712 aaPredicted RBP6.03□□□□□ -1.44
USP40-213ENST00000483216 EFNB3Q15768 340 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 XKR9Q5GH70 373 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 JAKMIP3Q5VZ66 844 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 CAPRIN2Q6IMN6 1127 aaKnown RBP6.03□□□□□ -1.44
USP40-213ENST00000483216 ANKRD54Q6NXT1 300 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 SLC35F3Q8IY50 421 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 PGBD5Q8N414 524 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 PCYOX1LQ8NBM8 494 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 ZNF114Q8NC26 417 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 RFFLQ8WZ73 363 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 CTAGE1Q96RT6 745 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 MKKSQ9NPJ1 570 aaPredicted RBP6.03□□□□□ -1.44
USP40-213ENST00000483216 WWOXQ9NZC7 414 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 CAMK2AQ9UQM7 478 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 NFS1Q9Y697 457 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 STON1Q9Y6Q2 735 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 TONSLQ96HA7 1378 aa6.03□□□□□ -1.44
USP40-213ENST00000483216 SRRM3A6NNA2 597 aaPredicted RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 BTBD18B2RXH4 712 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 ZBTB11O95625 1053 aaPredicted RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 ATP1A3P13637 1013 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 DAOP14920 347 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 CDAP32320 146 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 CTCFP49711 727 aaPredicted RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 GRSF1Q12849 480 aaKnown RBP eCLIP6.02□□□□□ -1.45
USP40-213ENST00000483216 G3BP1Q13283 466 aaKnown RBP eCLIP6.02□□□□□ -1.45
USP40-213ENST00000483216 DHX34Q14147 1143 aaKnown RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 KIF19Q2TAC6 998 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 PLEKHA7Q6IQ23 1121 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 FBXO46Q6PJ61 603 aaPredicted RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 LCTLQ6UWM7 567 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 C16orf82Q7Z2V1 217 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 ARMC9Q7Z3E5 817 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 ZBTB2Q8N680 514 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 HUS1BQ8NHY5 278 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 PABPC5Q96DU9 382 aaKnown RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 USP44Q9H0E7 712 aa6.02□□□□□ -1.45
USP40-213ENST00000483216 ESRP2Q9H6T0 727 aaKnown RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 PRKRIP1Q9H875 184 aaPredicted RBP6.02□□□□□ -1.45
USP40-213ENST00000483216 SLCO3A1Q9UIG8 710 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms