RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 FAM71BQ8TC56 605 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 FATE1Q969F0 183 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 LIN37Q96GY3 246 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 LGMNQ99538 433 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 CCDC3Q9BQI4 270 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.18□□□□□ -0.468e-12■■□□□ 13.9
SQSTM1-207ENST00000481335 DPH1Q9BZG8 443 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 THAP2Q9H0W7 228 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 WDR26Q9H7D7 661 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 CBX8Q9HC52 389 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 AMACRQ9UHK6 382 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 ANAPC7Q9UJX3 599 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 PHTF1Q9UMS5 762 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 LUC7L2Q9Y383 392 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 SYCE3A1L190 88 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 MYO1FO00160 1098 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 CPP00450 1065 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 MPOP05164 745 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 KRT10P13645 584 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 TLE3Q04726 772 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 PEX6Q13608 980 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 PERM1Q5SV97 790 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 MARC1Q5VT66 337 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 BROXQ5VW32 411 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 TIGD7Q6NT04 549 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 ALKBH5Q6P6C2 394 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 NDUFAF2Q8N183 169 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 WDR36Q8NI36 951 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 HSPH1Q92598 858 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 FUBP1Q96AE4 644 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 PDXPQ96GD0 296 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 NUP85Q9BW27 656 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 CAAP1Q9H8G2 361 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 PCDH18Q9HCL0 1135 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 ASCL3Q9NQ33 180 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 UVRAGQ9P2Y5 699 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 B4GALT6Q9UBX8 382 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 DNPEPQ9ULA0 475 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 PPIL1Q9Y3C6 166 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 OR1A2Q9Y585 309 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 ENTPD2Q9Y5L3 495 aa12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 ZFC3H1O60293 1989 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-207ENST00000481335 SCN8AQ9UQD0 1980 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 CCDC187A0A096LP49 1063 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 EIF4E1BA6NMX2 242 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 HEXIM1O94992 359 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 PYGLP06737 847 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 MYCLP1P12525 358 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 MYF5P13349 255 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 HOXB3P14651 431 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 GLB1P16278 677 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 AMPD1P23109 780 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 CES1P23141 567 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 ITPKBP27987 946 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 RBMS1P29558 406 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 HNRNPH3P31942 346 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 VIPR1P32241 457 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 MMP13P45452 471 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 SKOR1P84550 965 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 TRIM14Q14142 442 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 KRT81Q14533 505 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 ALG1LQ6GMV1 187 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 PNCKQ6P2M8 343 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 USP45Q70EL2 814 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 GPR155Q7Z3F1 870 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 LUZP1Q86V48 1076 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 SPACA3Q8IXA5 215 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 ARL14Q8N4G2 192 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 TEX26Q8N6G2 289 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 GPR156Q8NFN8 814 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 KIAA1524Q8TCG1 905 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 TSACCQ96A04 125 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 NUS1Q96E22 293 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 SCRN2Q96FV2 425 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 COQ10AQ96MF6 247 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 SLC46A1Q96NT5 459 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 FCRL3Q96P31 734 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 MCCC1Q96RQ3 725 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 ZNF670Q9BS34 389 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 POLR1EQ9GZS1 481 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 PHPT1Q9NRX4 125 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 APPL1Q9UKG1 709 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 GPR34Q9UPC5 381 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 SATB2Q9UPW6 733 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 MGAQ8IWI9 3026 aa12.16□□□□□ -0.46
SQSTM1-207ENST00000481335 AHCTF1Q8WYP5 2266 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 A0A087X0T9 212 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 PRSS38A1L453 326 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CDRT15L2A8MXV6 281 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 D6RAR5 112 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 NUDT21O43809 227 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 KALRNO60229 2985 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 PGLSO95336 258 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 GYPCP04921 128 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 PRKCGP05129 697 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 CELA2BP08218 269 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 ITGA2BP08514 1039 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 KRT7P08729 469 aa12.15□□□□□ -0.46
SQSTM1-207ENST00000481335 FAM228BP0C875 321 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms