RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RPL26P61254 145 aaKnown RBP12.25□□□□□ -0.45
PTPRF-212ENST00000477970 CUL3Q13618 768 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 TRIM60Q495X7 471 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 RALGPS1Q5JS13 557 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 LGI2Q8N0V4 545 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 FBXO22Q8NEZ5 403 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 SERPINI1Q99574 410 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 MAN1C1Q9NR34 630 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 NLE1Q9NVX2 485 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-212ENST00000477970 MICAL3Q7RTP6 2002 aa12.25□□□□□ -0.45
PTPRF-212ENST00000477970 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 SDHDO14521 159 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ATP4BP51164 291 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 MRPS35P82673 323 aaKnown RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 SULT2A1Q06520 285 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 TBL3Q12788 808 aaKnown RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CYLC2Q14093 348 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CCNIQ14094 377 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CSHL1Q14406 222 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 GSTA3Q16772 222 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 C7orf61Q8IZ16 206 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 DEFB107AQ8IZN7 70 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CEP70Q8NHQ1 597 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CXorf56Q9H5V9 222 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ZDHHC7Q9NXF8 308 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CCDC166P0CW27 439 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 PSMD8P48556 350 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF140P52738 457 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 PGAM4Q8N0Y7 254 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 KYQ8NBH2 561 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 BCL7CQ8WUZ0 217 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 B3GALT6Q96L58 329 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 TCF12Q99081 682 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF184Q99676 751 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 NUF2Q9BZD4 464 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 WDR55Q9H6Y2 383 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 UTP6Q9NYH9 597 aaKnown RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 STK39Q9UEW8 545 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 AFF4Q9UHB7 1163 aaKnown RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 POMPQ9Y244 141 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 TBC1D30Q9Y2I9 924 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF840PA6NDX5 716 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CD3EAPO15446 510 aaKnown RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CRTAMO95727 393 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CLTBP09497 229 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ETFBP38117 255 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ABL2P42684 1182 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 GATMP50440 423 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CDKN2DP55273 166 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ARPP19P56211 112 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 TCTN1Q2MV58 587 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 USP41Q3LFD5 358 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 KDELC2Q7Z4H8 507 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 ISCA2Q86U28 154 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CIR1Q86X95 450 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 TMEM126BQ8IUX1 230 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 MFN1Q8IWA4 741 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 NDNQ99608 321 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 GDF15Q99988 308 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 GSTO2Q9H4Y5 243 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 MARCH4Q9P2E8 410 aaPredicted RBP12.24□□□□□ -0.45
PTPRF-212ENST00000477970 WASF2Q9Y6W5 498 aa12.24□□□□□ -0.45
PTPRF-212ENST00000477970 CASQ2O14958 399 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 BUD23O43709 281 aaKnown RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 GOT2P00505 430 aaKnown RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 EPHA3P29320 983 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 CCR10P46092 362 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 KCNQ1P51787 676 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 STC1P52823 247 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 TIAL1Q01085 375 aaKnown RBP eCLIP12.23□□□□□ -0.457e-10■□□□□ 9
PTPRF-212ENST00000477970 TAF1AQ15573 450 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 HECTD3Q5T447 861 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 TPGS2Q68CL5 300 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 ANO7Q6IWH7 933 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 TMEM207Q6UWW9 146 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 PTAR1Q7Z6K3 402 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 DDX50Q9BQ39 737 aaKnown RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 C19orf43Q9BQ61 176 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 VCX3BQ9H321 246 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 CATSPERZQ9NTU4 200 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 UBA2Q9UBT2 640 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 BCAP29Q9UHQ4 241 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 TBX21Q9UL17 535 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 ABLIM3O94929 683 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 HMBSP08397 361 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 CD1DP15813 335 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 MAPRE2Q15555 327 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF678Q5SXM1 525 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF549Q6P9A3 640 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 TAS1R1Q7RTX1 841 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 KBTBD6Q86V97 674 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 ZNF354CQ86Y25 554 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 OR4L1Q8NH43 312 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 ANKRD49Q8WVL7 239 aa12.23□□□□□ -0.45
PTPRF-212ENST00000477970 PRICKLE1Q96MT3 831 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 AARSD1Q9BTE6 412 aaKnown RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 TFB2MQ9H5Q4 396 aaKnown RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 ZFP37Q9Y6Q3 630 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-212ENST00000477970 BRCA2P51587 3418 aa12.22□□□□□ -0.45
PTPRF-212ENST00000477970 A6NHS1 94 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 205.5 ms