RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 NKAIN2Q5VXU1 208 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 HGSNATQ68CP4 663 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ANKS6Q68DC2 871 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 KIAA1161Q6NSJ0 714 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 DENND1BQ6P3S1 775 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 C22orf39Q6P5X5 142 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 OGFOD3Q6PK18 319 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ENPP7Q6UWV6 458 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 LINC00114Q6XXX2 140 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 LEKR1Q6ZMV7 388 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 MAMDC2Q7Z304 686 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 SPRED1Q7Z699 444 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 CCDC117Q8IWD4 279 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 FAM114A1Q8IWE2 563 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 TRIM42Q8IWZ5 723 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 DMRTC2Q8IXT2 367 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 FAM186BQ8IYM0 893 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ZNF683Q8IZ20 524 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 PELI3Q8N2H9 469 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 LINC00301Q8NCQ3 95 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 TMEM174Q8WUU8 243 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 BTN2A2Q8WVV5 523 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 PATE1Q8WXA2 126 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ART4Q93070 314 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 FAM149B1Q96BN6 582 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 BTN2A3PQ96KV6 586 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 SERPINB11Q96P15 392 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 RPRD1AQ96P16 312 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 CMKLR1Q99788 373 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 CTRCQ99895 268 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 DDX50Q9BQ39 737 aaKnown RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 IMPG2Q9BZV3 1241 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 SLC13A1Q9BZW2 595 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 SIK2Q9H0K1 926 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 TMEM8AQ9HCN3 771 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 APMAPQ9HDC9 416 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ACP6Q9NPH0 428 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 MPP6Q9NZW5 540 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 LUZP4Q9P127 313 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 LRIT1Q9P2V4 623 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 HESX1Q9UBX0 185 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 IL36AQ9UHA7 158 aa5.34□□□□□ -1.55
PTPN4-209ENST00000469511 ERRFI1Q9UJM3 462 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-209ENST00000469511 CCDC168Q8NDH2 2452 aa5.34□□□□□ -1.56
PTPN4-209ENST00000469511 PRRC2CQ9Y520 2896 aaKnown RBP5.34□□□□□ -1.56
PTPN4-209ENST00000469511 SPTBP11277 2137 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 PCNX1Q96RV3 2341 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 FAM170AA1A519 330 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 C16orf96A6NNT2 1141 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 ZNF891A8MT65 544 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 B4DGG1 531 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 TCP11X1B4DZS4 312 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 TMX2-CTNND1H3BSU7 103 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 M0QYV0 167 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 DEAF1O75398 565 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 GRAP2O75791 330 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 DNAJB5O75953 348 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 APOEP02649 317 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 PF4P02776 101 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 PRNPP04156 253 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 GSTP1P09211 210 aaKnown RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 SETSIPP0DME0 302 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 CTSEP14091 401 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 TRIM21P19474 475 aaKnown RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 PDCP20941 246 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 SYT1P21579 422 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 LORP23490 312 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 NR2F2P24468 414 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 CDC25BP30305 580 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 CSF2RBP32927 897 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 GPD2P43304 727 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 RPL34P49207 117 aaKnown RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 NASPP49321 788 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 DNA2P51530 1060 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 CCNHP51946 323 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 SLC8A3P57103 927 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 ARF5P84085 180 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 AMPD3Q01432 767 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 GSTM4Q03013 218 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 SGCGQ13326 291 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 HLTFQ14527 1009 aaKnown RBP eCLIP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 STK38Q15208 465 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 IRF4Q15306 451 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 CNGA2Q16280 664 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 KLHL40Q2TBA0 621 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 WSCD2Q2TBF2 565 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 CERCAMQ5T4B2 595 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 OTUD1Q5VV17 481 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-209ENST00000469511 KRT39Q6A163 491 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 TMEM270Q6UE05 265 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 MACC1Q6ZN28 852 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 TFAP2DQ7Z6R9 452 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 XYLT1Q86Y38 959 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 DEFB106AQ8N104 65 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 ATP6V0D2Q8N8Y2 350 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 IQUBQ8NA54 791 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 TEX19Q8NA77 164 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 PLA2G15Q8NCC3 412 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 GALNT11Q8NCW6 608 aa5.33□□□□□ -1.56
PTPN4-209ENST00000469511 FBXL13Q8NEE6 735 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms