RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TP53INP2Q8IXH6 220 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 RCOR2Q8IZ40 523 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 ARL14Q8N4G2 192 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 NETO2Q8NC67 525 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 EXD1Q8NHP7 514 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 CASKIN2Q8WXE0 1202 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 RBM41Q96IZ5 413 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 CEP44Q9C0F1 390 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 SP110Q9HB58 689 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 ATXN7L1Q9ULK2 861 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 ACTL7AQ9Y615 435 aa12.03□□□□□ -0.48
SQSTM1-206ENST00000466342 J3KR12 359 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 APOL1O14791 398 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 SMAD6O43541 496 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PRAMEF11O60813 436 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PPFIA2O75334 1257 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 FAM87AP0C7U9 286 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 DGKAP23743 735 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 MLLT3P42568 568 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 RWDD2BP57060 319 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 IL10RBQ08334 325 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 GALNT2Q10471 571 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PPP2R5EQ16537 467 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 INO80DQ53TQ3 878 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 TFDP3Q5H9I0 405 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 AGBL4Q5VU57 503 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 LEKR1Q6ZMV7 388 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 TRIM69Q86WT6 500 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 RFX6Q8HWS3 928 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 CCDC50Q8IVM0 306 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PLPP6Q8IY26 295 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PCDH20Q8N6Y1 951 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PLD5Q8N7P1 536 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 UBE2Q2Q8WVN8 375 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 ALG3Q92685 438 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 ISG20Q96AZ6 181 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 ATXN7L3BQ96GX2 97 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 APOLD1Q96LR9 279 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 ALS2CR12Q96Q35 445 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 MAK16Q9BXY0 300 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PREBQ9HCU5 417 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 UBA2Q9UBT2 640 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 PACSIN2Q9UNF0 486 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 FCF1Q9Y324 198 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 ENTPD2Q9Y5L3 495 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 RP1P56715 2156 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 ICE1Q9Y2F5 2266 aa12.02□□□□□ -0.49
SQSTM1-206ENST00000466342 ANKRD17O75179 2603 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 hCG_1818297A0A087WSY0 165 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 KPNA3O00505 521 aaPredicted RBP12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 DDX3YO15523 660 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 ZSCAN12O43309 604 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 RNGTTO60942 597 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 ZNF821O75541 412 aaPredicted RBP12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 TMCC1O94876 653 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 CTSLP07711 333 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 GIMD1P0DJR0 217 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 ZFXP17010 805 aaPredicted RBP12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 PEX5P50542 639 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 TAS2R38P59533 333 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 COPS2P61201 443 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 PPP2CBP62714 309 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 PPP2CAP67775 309 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 TFDP2Q14188 446 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 STAT4Q14765 748 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 PIP5KL1Q5T9C9 394 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 ARHGAP36Q6ZRI8 547 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 LRRC49Q8IUZ0 686 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 FAM26EQ8N5C1 309 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 ATPAF2Q8N5M1 289 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 UBL4BQ8N7F7 174 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 TRIM58Q8NG06 486 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 MAPK15Q8TD08 544 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 HES6Q96HZ4 224 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 PPP1R16AQ96I34 528 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 SLC25A18Q9H1K4 315 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 TNKS2Q9H2K2 1166 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 USP29Q9HBJ7 922 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 LRRC4CQ9HCJ2 640 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 DYRK4Q9NR20 520 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 EVA1BQ9NVM1 165 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 UCKL1Q9NWZ5 548 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 IL36AQ9UHA7 158 aa12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 IPO11Q9UI26 975 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-206ENST00000466342 BLACEA4D250 179 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 PRAMEF26H0Y7S4 382 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 FFAR2O15552 330 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 MAFKO60675 156 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 CST8O60676 142 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 TNFSF15O95150 251 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 GSRP00390 522 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 THEGLP0DJG4 465 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 ALPPL2P10696 532 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 MX2P20592 715 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 TGM2P21980 687 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 PTPN7P35236 360 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 GARSP41250 739 aaKnown RBP12□□□□□ -0.49
SQSTM1-206ENST00000466342 FOXK1P85037 733 aa12□□□□□ -0.49
SQSTM1-206ENST00000466342 GBE1Q04446 702 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms