RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TRIM39Q9HCM9 518 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 ERGIC3Q9Y282 383 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 PLIN4Q96Q06 1357 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 SAGE2PA6NJ88 616 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 ACSBG2Q5FVE4 666 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 BRMS1LQ5PSV4 323 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CPSF7Q8N684 471 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 AP3S1Q92572 193 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 LPGAT1Q92604 370 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 UROC1Q96N76 676 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 ZNF624Q9P2J8 865 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CYP2A6P11509 494 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 IDH3AP50213 366 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 ADGRE1Q14246 886 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CATSPERGQ6ZRH7 1159 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 SLCO6A1Q86UG4 719 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 UBR7Q8N806 425 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CENPNQ96H22 339 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CPXM1Q96SM3 734 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 DUSP16Q9BY84 665 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CAB39LQ9H9S4 337 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 EIF2B3Q9NR50 452 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 MON2Q7Z3U7 1717 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 KPNA5O15131 536 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 BUD23O43709 281 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 CNPY1Q3B7I2 92 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 WSCD1Q658N2 575 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 IQSEC1Q6DN90 963 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 TOP6BLQ8N6T0 577 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 NKX2-3Q8TAU0 364 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 CIB1Q99828 191 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 CILPO75339 1184 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 PSEN1P49768 467 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 SPIDRQ14159 915 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 DEFB128Q7Z7B8 93 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 THG1LQ9NWX6 298 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 MRPL39Q9NYK5 338 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 MYPNQ86TC9 1320 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 H7C0S8 307 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 STAT5AP42229 794 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 MAPK8P45983 427 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 BOP1Q14137 746 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 BTG3Q14201 252 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 PPP1R26Q5T8A7 1209 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 RFWD3Q6PCD5 774 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 SCIMPQ6UWF3 145 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 UNC5BQ8IZJ1 945 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 UBE2E3Q969T4 207 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 RBM4BQ9BQ04 359 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 RBM4Q9BWF3 364 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 TMEM39AQ9NV64 488 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 SAMD4AQ9UPU9 718 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 ANGPT4Q9Y264 503 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 LINC00032P0C843 101 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 PTPN3P26045 913 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 WDR4P57081 412 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 RPL38P63173 70 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 CSNK2BP67870 215 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 TEX44Q53QW1 395 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 LENG8Q96PV6 779 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 EBF3Q9H4W6 596 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 POMPQ9Y244 141 aa19.05■□□□□ 0.64
CCDC88B-204ENST00000463837 BMP10O95393 424 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 ADORA2AP29274 412 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 ATP12AP54707 1039 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 CDK18Q07002 472 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 HIPK1Q86Z02 1210 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 CDYL2Q8N8U2 506 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 P2RX7Q99572 595 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 TDRD1Q9BXT4 1180 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 TRIM8Q9BZR9 551 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 RNF19AQ9NV58 838 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 COQ4Q9Y3A0 265 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 TRPV2Q9Y5S1 764 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 SGTAO43765 313 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 CCT3P49368 545 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 FSTL1Q12841 308 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 OR2T12Q8NG77 320 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 RAD18Q9NS91 495 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 MARCH2Q9P0N8 246 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 AP2A1O95782 977 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 AMHP03971 560 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 PCSK2P16519 638 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 GPR180Q86V85 440 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 GLIS2Q9BZE0 524 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 CIPCQ9C0C6 399 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 TMEM165Q9HC07 324 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 GLOD4Q9HC38 313 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 SAMHD1Q9Y3Z3 626 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 YDJCA8MPS7 323 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 ZBTB11O95625 1053 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 POMCP01189 267 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 HTR7P34969 479 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 RPS6KA3P51812 740 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 AQP4P55087 323 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 IRF8Q02556 426 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 SH3BP5LQ7L8J4 393 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 CERS5Q8N5B7 392 aa19.04■□□□□ 0.64
CCDC88B-204ENST00000463837 MCFD2Q8NI22 146 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms