RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 TTC13Q8NBP0 860 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 DENND6BQ8NEG7 585 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 FAM174AQ8TBP5 190 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 CENPTQ96BT3 561 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 SCRN2Q96FV2 425 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 MYOCQ99972 504 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 GAREM1Q9H706 876 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 GLOD4Q9HC38 313 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 FNDC3AQ9Y2H6 1198 aaKnown RBP20.03■□□□□ 0.8
COL9A3-202ENST00000452372 FAM208BQ5VWN6 2430 aa20.03■□□□□ 0.8
COL9A3-202ENST00000452372 ANKRD11Q6UB99 2663 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-202ENST00000452372 FREM2Q5SZK8 3169 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 RAD51BO15315 384 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 CER1O95813 267 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 PRLP01236 227 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 CAPNS1P04632 268 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 ZNF883P0CG24 379 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 RBP3P10745 1247 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 C6P13671 934 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 RBL1P28749 1068 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 EIF3EP60228 445 aaKnown RBP20.02■□□□□ 0.8
COL9A3-202ENST00000452372 RPL26P61254 145 aaKnown RBP20.02■□□□□ 0.8
COL9A3-202ENST00000452372 RALGDSQ12967 914 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 AGERQ15109 404 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 LIPIQ6XZB0 460 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 GCNT7Q6ZNI0 430 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 ABI3BPQ7Z7G0 1075 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 TADA1Q96BN2 335 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 KLHDC7BQ96G42 594 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 BMFQ96LC9 184 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 MCCC1Q96RQ3 725 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-202ENST00000452372 C1QTNF7Q9BXJ2 289 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 CARD9Q9H257 536 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 PCDH9Q9HC56 1237 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 B4GALT6Q9UBX8 382 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 PCOLCE2Q9UKZ9 415 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 RPL26L1Q9UNX3 145 aaKnown RBP20.02■□□□□ 0.8
COL9A3-202ENST00000452372 CHKBQ9Y259 395 aa20.02■□□□□ 0.8
COL9A3-202ENST00000452372 TP53BP1Q12888 1972 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-202ENST00000452372 GOLGA4Q13439 2230 aaKnown RBP20.01■□□□□ 0.79
COL9A3-202ENST00000452372 H0Y8X5 98 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 FPGTO14772 594 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 TRIM16O95361 564 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 CYP2A6P11509 494 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-202ENST00000452372 CD68P34810 354 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-202ENST00000452372 CLDN2P57739 230 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 NXPH1P58417 271 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 SLC14A2Q15849 920 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 ZNF423Q2M1K9 1284 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 SEL1L2Q5TEA6 688 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 SLCO6A1Q86UG4 719 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 CDKL3Q8IVW4 592 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-202ENST00000452372 ZNF567Q8N184 647 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 RBM15Q96T37 977 aaKnown RBP eCLIP20.01■□□□□ 0.79
COL9A3-202ENST00000452372 FERMT1Q9BQL6 677 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 TLR10Q9BXR5 811 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 C10orf88Q9H8K7 445 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 GDF3Q9NR23 364 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 KLHL8Q9P2G9 620 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-202ENST00000452372 TRHDEQ9UKU6 1024 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 COQ6Q9Y2Z9 468 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 PTPRBP23467 1997 aa20.01■□□□□ 0.79
COL9A3-202ENST00000452372 KNTC1P50748 2209 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 A0A0J9YYE9 177 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 POM121BA6NF01 834 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 A6NNZ2 444 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 A8MX80 341 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 KCNK3O14649 394 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 LZTS3O60299 673 aaPredicted RBP20■□□□□ 0.79
COL9A3-202ENST00000452372 DFNA5O60443 496 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 TRBC1P01850 177 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 ELFN1P0C7U0 828 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 THEGLP0DJG4 465 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 VIPR1P32241 457 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 EPHB1P54762 984 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 DARS2Q6PI48 645 aaKnown RBP20■□□□□ 0.79
COL9A3-202ENST00000452372 USP45Q70EL2 814 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 PID1Q7Z2X4 250 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 GLRX5Q86SX6 157 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 SPATS2Q86XZ4 545 aaKnown RBP20■□□□□ 0.79
COL9A3-202ENST00000452372 CBARPQ8N350 705 aaPredicted RBP20■□□□□ 0.79
COL9A3-202ENST00000452372 PNPLA1Q8N8W4 532 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 BAHD1Q8TBE0 780 aaPredicted RBP20■□□□□ 0.79
COL9A3-202ENST00000452372 FAM118BQ9BPY3 351 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 ERVMER34-1Q9H9K5 563 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 TM7SF3Q9NS93 570 aa20■□□□□ 0.79
COL9A3-202ENST00000452372 LAMA5O15230 3695 aa19.99■□□□□ 0.79
COL9A3-202ENST00000452372 TCRBV7S2A1N4TA0A589 114 aa19.99■□□□□ 0.79
COL9A3-202ENST00000452372 ZNF189O75820 626 aaPredicted RBP19.99■□□□□ 0.79
COL9A3-202ENST00000452372 HEXIM1O94992 359 aaKnown RBP19.99■□□□□ 0.79
COL9A3-202ENST00000452372 CTPS1P17812 591 aa19.99■□□□□ 0.79
COL9A3-202ENST00000452372 HNF1BP35680 557 aa19.99■□□□□ 0.79
COL9A3-202ENST00000452372 LRRC14Q15048 493 aa19.99■□□□□ 0.79
COL9A3-202ENST00000452372 KYAT3Q6YP21 454 aaKnown RBP19.99■□□□□ 0.79
COL9A3-202ENST00000452372 Q6ZSR6 202 aa19.99■□□□□ 0.79
COL9A3-202ENST00000452372 SLC13A5Q86YT5 568 aaPredicted RBP19.99■□□□□ 0.79
COL9A3-202ENST00000452372 DCP2Q8IU60 420 aaKnown RBP19.99■□□□□ 0.79
COL9A3-202ENST00000452372 TP53I13Q8NBR0 393 aaPredicted RBP19.99■□□□□ 0.79
COL9A3-202ENST00000452372 OR13H1Q8NG92 308 aa19.99■□□□□ 0.79
COL9A3-202ENST00000452372 SPATA22Q8NHS9 363 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms