RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 WISP1O95388 367 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 PSMA2P25787 234 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 COPB1P53618 953 aaKnown RBP13.34□□□□□ -0.27
HMGB3-204ENST00000448905 AP1S1P61966 158 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 IL10RBQ08334 325 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 CLPPQ16740 277 aaPredicted RBP13.34□□□□□ -0.27
HMGB3-204ENST00000448905 PHF19Q5T6S3 580 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 SASS6Q6UVJ0 657 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 PRICKLE2Q7Z3G6 844 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 PSTKQ8IV42 348 aaKnown RBP13.34□□□□□ -0.27
HMGB3-204ENST00000448905 BBS5Q8N3I7 341 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 PLA2G15Q8NCC3 412 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 OR1E3Q8WZA6 343 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 TMEM168Q9H0V1 697 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 SEPT3Q9UH03 358 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 LIMA1Q9UHB6 759 aaKnown RBP13.34□□□□□ -0.27
HMGB3-204ENST00000448905 AP4E1Q9UPM8 1137 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 RNF215Q9Y6U7 377 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 TCRBV5S1A1TA0A578 114 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 B4DGG1 531 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 CASC3O15234 703 aaKnown RBP13.33□□□□□ -0.28
HMGB3-204ENST00000448905 PRPSAP2O60256 369 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 NOBOXO60393 691 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 CPNE6O95741 557 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 PRKCGP05129 697 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 HGFP14210 728 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 ALDH4A1P30038 563 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 HCAR3P49019 387 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 MAPK10P53779 464 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 ILF3Q12906 894 aaKnown RBP eCLIP13.33□□□□□ -0.28
HMGB3-204ENST00000448905 NFATC3Q12968 1075 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 MAMLD1Q13495 774 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 HLTFQ14527 1009 aaKnown RBP eCLIP13.33□□□□□ -0.28
HMGB3-204ENST00000448905 TGIF1Q15583 401 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 PPP1R15BQ5SWA1 713 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 SPECC1LQ69YQ0 1117 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 RFX8Q6ZV50 586 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 DPPA4Q7L190 304 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 SPRED1Q7Z699 444 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 NSMCE1Q8WV22 266 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 USP7Q93009 1102 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 ECHDC3Q96DC8 303 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 PDXPQ96GD0 296 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 ZNF599Q96NL3 588 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 GSDMCQ9BYG8 508 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 PHPT1Q9NRX4 125 aaPredicted RBP13.33□□□□□ -0.28
HMGB3-204ENST00000448905 ANO10Q9NW15 660 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 PCSK1NQ9UHG2 260 aa13.33□□□□□ -0.28
HMGB3-204ENST00000448905 HELZ2Q9BYK8 2649 aaKnown RBP13.32□□□□□ -0.28
HMGB3-204ENST00000448905 ATMQ13315 3056 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 LGALS16A8MUM7 142 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 A8MX80 341 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 CCNB1P14635 433 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 ERCC2P18074 760 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 HSPA9P38646 679 aaKnown RBP13.32□□□□□ -0.28
HMGB3-204ENST00000448905 LBRQ14739 615 aaKnown RBP13.32□□□□□ -0.28
HMGB3-204ENST00000448905 AMZ1Q400G9 498 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 MAP9Q49MG5 647 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 PPP6R3Q5H9R7 873 aaPredicted RBP13.32□□□□□ -0.28
HMGB3-204ENST00000448905 ZSWIM9Q86XI8 627 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 NDUFAF2Q8N183 169 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 CCDC112Q8NEF3 446 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 PSKH2Q96QS6 385 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 ERGIC2Q96RQ1 377 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 ZWILCHQ9H900 591 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 CARS2Q9HA77 564 aaKnown RBP13.32□□□□□ -0.28
HMGB3-204ENST00000448905 FGF22Q9HCT0 170 aa13.32□□□□□ -0.28
HMGB3-204ENST00000448905 MRPL40Q9NQ50 206 aaKnown RBP13.32□□□□□ -0.28
HMGB3-204ENST00000448905 TRNAU1APQ9NX07 287 aaKnown RBP13.32□□□□□ -0.28
HMGB3-204ENST00000448905 PRAMEF33A0A0G2JMD5 474 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 PRSS38A1L453 326 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 TMCO5BA8MYB1 307 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 PRAMEF10O60809 474 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 CYP2A6P11509 494 aaPredicted RBP13.31□□□□□ -0.28
HMGB3-204ENST00000448905 MYCLP1P12525 358 aaPredicted RBP13.31□□□□□ -0.28
HMGB3-204ENST00000448905 ITIH1P19827 911 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 GPR3P46089 330 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 CSRP3P50461 194 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 B4GALNT1Q00973 533 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 MYL5Q02045 173 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 ATG14Q6ZNE5 492 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 ZFAND4Q86XD8 727 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 EXD3Q8N9H8 876 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 GPBAR1Q8TDU6 330 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 ZDHHC1Q8WTX9 485 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 PDCD6IPQ8WUM4 868 aaKnown RBP13.31□□□□□ -0.28
HMGB3-204ENST00000448905 EXTL1Q92935 676 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 SEMA3CQ99985 751 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 DPYSL5Q9BPU6 564 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 LGR4Q9BXB1 951 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 GPATCH2LQ9NWQ4 482 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 MYO6Q9UM54 1294 aa13.31□□□□□ -0.28
HMGB3-204ENST00000448905 TMEM191CA6NGB0 347 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 STMND1H3BQB6 276 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 AGRPO00253 132 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 TRAFD1O14545 582 aaPredicted RBP13.3□□□□□ -0.28
HMGB3-204ENST00000448905 HGSO14964 777 aaPredicted RBP13.3□□□□□ -0.28
HMGB3-204ENST00000448905 B4GAT1O43505 415 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 SOCS5O75159 536 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 FGF1P05230 155 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms