RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 APPL1Q9UKG1 709 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 PHTF1Q9UMS5 762 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 GPR34Q9UPC5 381 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SATB2Q9UPW6 733 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ENTPD2Q9Y5L3 495 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 U3KQA8 63 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 MGAQ8IWI9 3026 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 PTPRQQ9UMZ3 2332 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 SCN8AQ9UQD0 1980 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 A0A1B0GTH6 734 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 CDRT15L2A8MXV6 281 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 PSMD11O00231 422 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 NTN3O00634 580 aaPredicted RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 INSIG1O15503 277 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 TEX33O43247 280 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 NUDT21O43809 227 aaKnown RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 BUB1BO60566 1050 aaPredicted RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 RECQL5O94762 991 aaPredicted RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 TNFSF15O95150 251 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 TPM3P06753 285 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 MYF5P13349 255 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 CA4P22748 312 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 TEAD1P28347 426 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 INHBCP55103 352 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 OGDHQ02218 1023 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 VAC14Q08AM6 782 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 ACOX1Q15067 660 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 DPYSL2Q16555 572 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 HADHQ16836 314 aaKnown RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 ALG11Q2TAA5 492 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 ANO6Q4KMQ2 910 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 TAF1BQ53T94 588 aaPredicted RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 LRRC73Q5JTD7 316 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 TMEM164Q5U3C3 297 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 MARC1Q5VT66 337 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 PNCKQ6P2M8 343 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 OGFOD3Q6PK18 319 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 LIPIQ6XZB0 460 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 DPPA4Q7L190 304 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 RAB11FIP2Q7L804 512 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 TAF8Q7Z7C8 310 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 CLEC14AQ86T13 490 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 MAP7D3Q8IWC1 876 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 FAM46DQ8NEK8 389 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 PCDH19Q8TAB3 1148 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 TSACCQ96A04 125 aaPredicted RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 VOPP1Q96AW1 172 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 ZNF653Q96CK0 615 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 ATXN7L3BQ96GX2 97 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 CELF6Q96J87 481 aaKnown RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 NUDCD1Q96RS6 583 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 B3GNT4Q9C0J1 378 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 CLPBQ9H078 707 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 HSD3B7Q9H2F3 369 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 DPEP2Q9H4A9 486 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 WDR26Q9H7D7 661 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 CWC15Q9P013 229 aaKnown RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 AMACRQ9UHK6 382 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 DNPEPQ9ULA0 475 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 COQ6Q9Y2Z9 468 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 OR1A2Q9Y585 309 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 PCDHGA7Q9Y5G6 932 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 RAI2Q9Y5P3 530 aa7.1□□□□□ -1.27
VPS41-208ENST00000448833 FASNP49327 2511 aaKnown RBP7.1□□□□□ -1.27
VPS41-208ENST00000448833 COL27A1Q8IZC6 1860 aaPredicted RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 A0A1W2PQJ5 194 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 MYO1FO00160 1098 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 PLD2O14939 933 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 NVLO15381 856 aaKnown RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 HTRA2O43464 458 aaPredicted RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 LRCH4O75427 683 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 CPP00450 1065 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 SERPING1P05155 500 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 PCCBP05166 539 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 JMJD7P0C870 316 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 MYCLP1P12525 358 aaPredicted RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 ITIH2P19823 946 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 CD82P27701 267 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 CCKBRP32239 447 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 VIPR1P32241 457 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 GPR3P46089 330 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ILF3Q12906 894 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS41-208ENST00000448833 BIRC2Q13490 618 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 DPYSQ14117 519 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 NR1I3Q14994 352 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 C14orf28Q4W4Y0 310 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 PERM1Q5SV97 790 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 TPRG1LQ5T0D9 272 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 CCDC122Q5T0U0 273 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 TIGD7Q6NT04 549 aaPredicted RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 FOXR1Q6PIV2 292 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 CCDC81Q6ZN84 652 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 USP45Q70EL2 814 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ZNF571Q7Z3V5 609 aaPredicted RBP7.09□□□□□ -1.27
VPS41-208ENST00000448833 POLNQ7Z5Q5 900 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ZNF605Q86T29 641 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 PIM3Q86V86 326 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 NLRP8Q86W28 1048 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 CCNJLQ8IV13 435 aa7.09□□□□□ -1.27
VPS41-208ENST00000448833 ARHGAP12Q8IWW6 846 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms