RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 GPR180Q86V85 440 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 AGAP11Q8TF27 550 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 DLG3Q92796 817 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 ACSS3Q9H6R3 686 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 FSCN2O14926 492 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 GMFGO60234 142 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 CYP4B1P13584 511 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 C21orf59P57076 290 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 UBE2R2Q712K3 238 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 PHF10Q8WUB8 498 aaKnown RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 EHD3Q9NZN3 535 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 NAIF1Q69YI7 327 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 CHADLQ6NUI6 762 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 KIAA0408Q6ZU52 694 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 PAGE2Q7Z2X7 111 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 ZBTB46Q86UZ6 589 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 OR52E6Q96RD3 313 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 NPAS2Q99743 824 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 RPS6KA6Q9UK32 745 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 BTNL10A8MVZ5 291 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 RNF225M0QZC1 329 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 HDAC3O15379 428 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 OR10H3O60404 316 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 UNC5CO95185 931 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 PRG2P13727 222 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 SRSF11Q05519 484 aaKnown RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 FBXO48Q5FWF7 155 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 TATDN1Q6P1N9 297 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 LDB1Q86U70 411 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-209ENST00000438120 FLCNQ8NFG4 579 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 OR4A15Q8NGL6 344 aa17.22■□□□□ 0.35
PTPRF-209ENST00000438120 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 IQCMA0A1B0GVH7 501 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 NELFEP18615 380 aaKnown RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 PURAQ00577 322 aaKnown RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 TUSC3Q13454 348 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 LYPLAL1Q5VWZ2 237 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 SH3BP5LQ7L8J4 393 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 AARSD1Q9BTE6 412 aaKnown RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 C2orf71A6NGG8 1288 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 IQCF5A8MTL0 148 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 MFN2O95140 757 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 ABHD2P08910 425 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 NET1Q7Z628 596 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 XYLT1Q86Y38 959 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 RAVER1Q8IY67 606 aaKnown RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 IPCEF1Q8WWN9 437 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 OR8D1Q8WZ84 308 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 EPB41L1Q9H4G0 881 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 PSMD11O00231 422 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 SNPHO15079 494 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 ASNA1O43681 348 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 ZNF540Q8NDQ6 660 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 RFXANKO14593 260 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 MAP2K7O14733 419 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 TNFRSF8P28908 595 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 GABRB2P47870 512 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 TNK2Q07912 1038 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 RGS1Q08116 209 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 DUSP28Q4G0W2 176 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 KCTD15Q96SI1 283 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-209ENST00000438120 CD84Q9UIB8 345 aa17.21■□□□□ 0.35
PTPRF-209ENST00000438120 MFSD11O43934 449 aa17.21■□□□□ 0.34
PTPRF-209ENST00000438120 FGF1P05230 155 aa17.21■□□□□ 0.34
PTPRF-209ENST00000438120 CORO1AP31146 461 aaKnown RBP17.21■□□□□ 0.34
PTPRF-209ENST00000438120 TSHZ1Q6ZSZ6 1077 aa17.21■□□□□ 0.34
PTPRF-209ENST00000438120 PIWIL4Q7Z3Z4 852 aaKnown RBP17.21■□□□□ 0.34
PTPRF-209ENST00000438120 LRRC49Q8IUZ0 686 aa17.21■□□□□ 0.34
PTPRF-209ENST00000438120 RBFAQ8N0V3 343 aa17.21■□□□□ 0.34
PTPRF-209ENST00000438120 C12orf50Q8NA57 414 aaPredicted RBP17.21■□□□□ 0.34
PTPRF-209ENST00000438120 KIAA1522Q9P206 1035 aaPredicted RBP17.21■□□□□ 0.34
PTPRF-209ENST00000438120 EVLQ9UI08 416 aaPredicted RBP17.21■□□□□ 0.34
PTPRF-209ENST00000438120 R3HDM2Q9Y2K5 976 aaKnown RBP17.21■□□□□ 0.34
PTPRF-209ENST00000438120 ACTL7BQ9Y614 415 aa17.21■□□□□ 0.34
PTPRF-209ENST00000438120 KCNE2Q9Y6J6 123 aa17.21■□□□□ 0.34
PTPRF-209ENST00000438120 CCDC189A1A4V9 331 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 GTPBP1O00178 669 aaKnown RBP17.2■□□□□ 0.34
PTPRF-209ENST00000438120 FFAR2O15552 330 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 DNTTP04053 509 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 EIF2B2P49770 351 aaKnown RBP17.2■□□□□ 0.34
PTPRF-209ENST00000438120 BMT2Q1RMZ1 405 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 OR4K2Q8NGD2 314 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 POLR1BQ9H9Y6 1135 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 TMCO1Q9UM00 188 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 TRIM38O00635 465 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 SCN2BO60939 215 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 KRT33AO76009 404 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 PGM3O95394 542 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 ITGA1P56199 1179 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 FAM46CQ5VWP2 391 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 UTS2BQ765I0 119 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 RAD51AP1Q96B01 352 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 CSPG4P5Q96PW8 444 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 GLOD4Q9HC38 313 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 SMIM35A0A1B0GVV1 85 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 STBD1O95210 358 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 UGT2B4P06133 528 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 BTN2A1Q7KYR7 527 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 OTOP2Q7RTS6 562 aa17.2■□□□□ 0.34
PTPRF-209ENST00000438120 PNPT1Q8TCS8 783 aaKnown RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms