RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MRPS33Q9Y291 106 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 TAF6LQ9Y6J9 622 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 INTS6LQ5JSJ4 861 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 MUC3BQ9H195 1237 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PLEKHA6Q9Y2H5 1048 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PLOD3O60568 738 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ADORA1P30542 326 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 RPTNQ6XPR3 784 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 SCN4BQ8IWT1 228 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZFPM1Q8IX07 1006 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 FN3KQ9H479 309 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 MID1IP1Q9NPA3 183 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PTGFRNQ9P2B2 879 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 CEMIPQ8WUJ3 1361 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 UGT2B17O75795 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 RPL4P36578 427 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 C2orf80Q0P641 193 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 BIKQ13323 160 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PTGR1Q14914 329 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ARL6IP1Q15041 203 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 TDRD10Q5VZ19 366 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 ITIH5Q86UX2 942 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 CHERPQ8IWX8 916 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 C4orf19Q8IY42 314 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PRMT6Q96LA8 375 aaPredicted RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 PCDHGC3Q9UN70 934 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 KANTRA0A1W2PQU2 76 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 CYCSP99999 105 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 CARTPTQ16568 116 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ANKS1BQ7Z6G8 1248 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 SLC44A3Q8N4M1 653 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 KAT5Q92993 513 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZFYVE28Q9HCC9 887 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 NINJ2Q9NZG7 142 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 MTRRQ9UBK8 725 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PLLPQ9Y342 182 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 KNTC1P50748 2209 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L15C9J2P7 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L13C9JLJ4 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L11C9JVI0 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L18D6R9N7 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L22D6RA61 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L17D6RBQ6 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L19D6RCP7 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L20D6RJB6 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 KAT7O95251 611 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ANXA5P08758 320 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 GABARAPL2P60520 117 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 HERVK_113P62684 666 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 USP17L24Q0WX57 530 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 EGFLAMQ63HQ2 1017 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 FAM131AQ6UXB0 335 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 GPR180Q86V85 440 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ELOVL4Q9GZR5 314 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 LACRTQ9GZZ8 138 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZBTB14O43829 449 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 KERAO60938 352 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ARL6IP5O75915 188 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 HPRP00739 348 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 GYS1P13807 737 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ATF4P18848 351 aaPredicted RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 IDH2P48735 452 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 ABATP80404 500 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 FAXCQ5TGI0 409 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 RNF146Q9NTX7 359 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 KANSL3Q9P2N6 904 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 CASKO14936 926 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PER2O15055 1255 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 RAB10P61026 200 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 GPRC6AQ5T6X5 926 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 GPSM1Q86YR5 675 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 MFSD2AQ8NA29 543 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 BPIFB6Q8NFQ5 453 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 TMEM184CQ9NVA4 438 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 POLR3BQ9NW08 1133 aaPredicted RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 TAS2R8Q9NYW2 309 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 SH3BP1Q9Y3L3 701 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 TSPOAP1O95153 1857 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 TRIM64CA6NLI5 447 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 DDX3YO15523 660 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 NPHS1O60500 1241 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 TRIM23P36406 574 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZNF517Q6ZMY9 492 aaPredicted RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZNF410Q86VK4 478 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 BBS4Q96RK4 519 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 SH2D3AQ9BRG2 576 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ALG13Q9NP73 1137 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 STXBP5LQ9Y2K9 1186 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ALG5Q9Y673 324 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 LMO7Q8WWI1 1683 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ANGPTL1O95841 491 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 TACSTD2P09758 323 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 CPA2P48052 419 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ADAM17P78536 824 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 LRRC69Q6ZNQ3 347 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZNF567Q8N184 647 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 OR2T12Q8NG77 320 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PPP1R14AQ96A00 147 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 EBNA1BP2Q99848 306 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 MXRA8Q9BRK3 442 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms