RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PTGIRP43119 386 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 CHRNA4P43681 627 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 GRIA4P48058 902 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 FNTAP49354 379 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 LIG3P49916 1009 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 GEMP55040 296 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 BNC1Q01954 994 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 PTSQ03393 145 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 OLIG2Q13516 323 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 CNGA3Q16281 694 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 WDR45BQ5MNZ6 344 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 ZNF572Q7Z3I7 529 aaPredicted RBP12.46□□□□□ -0.41
USP40-205ENST00000430158 TECPR1Q7Z6L1 1165 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 ZSCAN30Q86W11 494 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 SYT12Q8IV01 421 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 LPCAT1Q8NF37 534 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 KLK6Q92876 244 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 SLCO2A1Q92959 643 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 CENPTQ96BT3 561 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 CAPZA3Q96KX2 299 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 LENG8Q96PV6 779 aaPredicted RBP12.46□□□□□ -0.41
USP40-205ENST00000430158 SLC17A9Q9BYT1 436 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 ETNK1Q9HBU6 452 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 PARD6AQ9NPB6 346 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 PCYOX1Q9UHG3 505 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 SPO11Q9Y5K1 396 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 SPTBN4Q9H254 2564 aa12.46□□□□□ -0.42
USP40-205ENST00000430158 PCNX2A6NKB5 2137 aa12.46□□□□□ -0.42
USP40-205ENST00000430158 TDRD6O60522 2096 aaKnown RBP12.46□□□□□ -0.42
USP40-205ENST00000430158 IFNB1P01574 187 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 TUBB4AP04350 444 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 WNT1P04628 370 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 C6P13671 934 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 CA4P22748 312 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 MAT2AP31153 395 aaKnown RBP12.45□□□□□ -0.42
USP40-205ENST00000430158 FAM193AP78312 1265 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 SEMA5AQ13591 1074 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 GALNT3Q14435 633 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 SLC1A5Q15758 541 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 PCSK7Q16549 785 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 SIRPB2Q5JXA9 342 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 CFAP58Q5T655 872 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 FAXCQ5TGI0 409 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 ERAP2Q6P179 960 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 CCDC137Q6PK04 289 aaKnown RBP12.45□□□□□ -0.42
USP40-205ENST00000430158 ARHGEF18Q6ZSZ5 1173 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 RFLNAQ6ZTI6 216 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 CYP2U1Q7Z449 544 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 KDELC2Q7Z4H8 507 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 HSD11B1LQ7Z5J1 315 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 TP53I13Q8NBR0 393 aaPredicted RBP12.45□□□□□ -0.42
USP40-205ENST00000430158 IPMKQ8NFU5 416 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 PIGKQ92643 395 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 WRAP53Q9BUR4 548 aaKnown RBP12.45□□□□□ -0.42
USP40-205ENST00000430158 DDX47Q9H0S4 455 aaKnown RBP12.45□□□□□ -0.42
USP40-205ENST00000430158 ARRDC1-AS1Q9H2J1 176 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 CAPN10Q9HC96 672 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 TM9SF3Q9HD45 589 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 DMTF1Q9Y222 760 aa12.45□□□□□ -0.42
USP40-205ENST00000430158 AAR2Q9Y312 384 aaKnown RBP12.45□□□□□ -0.42
USP40-205ENST00000430158 TMEM131Q92545 1883 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 ATXN2Q99700 1313 aaKnown RBP12.44□□□□□ -0.42
USP40-205ENST00000430158 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.44□□□□□ -0.42
USP40-205ENST00000430158 MEI4A8MW99 385 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 A8MX80 341 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 PATE3B3GLJ2 98 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 SLC31A1O15431 190 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 SUN1O94901 812 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 AP2A1O95782 977 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 PAK4O96013 591 aaPredicted RBP12.44□□□□□ -0.42
USP40-205ENST00000430158 CYP2A6P11509 494 aaPredicted RBP12.44□□□□□ -0.42
USP40-205ENST00000430158 XPAP23025 273 aaPredicted RBP12.44□□□□□ -0.42
USP40-205ENST00000430158 FDFT1P37268 417 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 MPLP40238 635 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 MAGEA6P43360 314 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 STC1P52823 247 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 SPARCL1Q14515 664 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 WSCD2Q2TBF2 565 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 SETMARQ53H47 684 aaPredicted RBP12.44□□□□□ -0.42
USP40-205ENST00000430158 SYCP2LQ5T4T6 812 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 NAPEPLDQ6IQ20 393 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 GCNT7Q6ZNI0 430 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 USP45Q70EL2 814 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 TMC3Q7Z5M5 1100 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 ABI3BPQ7Z7G0 1075 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 PELI3Q8N2H9 469 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 TTC30BQ8N4P2 665 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 DCLK2Q8N568 766 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 BMFQ96LC9 184 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 SLC6A18Q96N87 628 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 FICDQ9BVA6 458 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 ADGRE3Q9BY15 652 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 SMOC1Q9H4F8 434 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 MAGEE1Q9HCI5 957 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 MBNL1Q9NR56 388 aaKnown RBP12.44□□□□□ -0.42
USP40-205ENST00000430158 GPR27Q9NS67 375 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 PAK5Q9P286 719 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 RAB23Q9ULC3 237 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 CA5BQ9Y2D0 317 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 COQ6Q9Y2Z9 468 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms