RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 IMP3Q9NV31 184 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF222Q9UK12 451 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GRIN2DO15399 1336 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CDC40O60508 579 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 IL18R1Q13478 541 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 QSOX2Q6ZRP7 698 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 NANOGNBQ7Z5D8 188 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 FAM13CQ8NE31 585 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 TSEN15Q8WW01 171 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SEMA4DQ92854 862 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PTCD3Q96EY7 689 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GAD1Q99259 594 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 COMMD4Q9H0A8 199 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 LDAHQ9H6V9 325 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 TMEM134Q9H6X4 195 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 IFT46Q9NQC8 304 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ARMCX1Q9P291 453 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PCDHGA3Q9Y5H0 932 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PPRC1Q5VV67 1664 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 OR6C75A6NL08 312 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 G3V2T6 193 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MRASO14807 208 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SNAP91O60641 907 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ARP10275 920 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SAGP10523 405 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 BGNP21810 368 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PSRC1Q6PGN9 363 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 KBTBD8Q8NFY9 601 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ADAM32Q8TC27 787 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 EPS8L3Q8TE67 593 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GAL3ST3Q96A11 431 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 B3GAT2Q9NPZ5 323 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 DEC1Q9P2X7 70 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 HMGXB4Q9UGU5 601 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 INO80Q9ULG1 1556 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MYO18AQ92614 2054 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 FAM234BA2RU67 622 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 H0YGN5 161 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ERBB2P04626 1255 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GYPCP04921 128 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PSMD5Q16401 504 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CELF3Q5SZQ8 465 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GPRIN3Q6ZVF9 776 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 RIOX2Q8IUF8 465 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 LRRC17Q8N6Y2 441 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SETD6Q8TBK2 473 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ACTL9Q8TC94 416 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 HIPK3Q9H422 1215 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 FOXN1O15353 648 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 C22orf31O95567 290 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 NTSR2O95665 410 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 TPH1P17752 444 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ERCC2P18074 760 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SP100P23497 879 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 DDX6P26196 483 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CCKBRP32239 447 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SSR2P43308 183 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 RRP1BQ14684 758 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 NEDD8Q15843 81 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 HKDC1Q2TB90 917 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF697Q5TEC3 545 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 FKBP1CQ5VVH2 108 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 OR7A2PQ8NGA2 310 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF606Q8WXB4 792 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 RFT1Q96AA3 541 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 DHRS7Q9Y394 339 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 TRIM64BA6NI03 449 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PEX12O00623 359 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GSC2O15499 205 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 RNASEH2AO75792 299 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PRNPP04156 253 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 NTRK1P04629 796 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MTHFD1P11586 935 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 IDO1P14902 403 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CXCR3P49682 368 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CRYBB1P53674 252 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PLGLB1Q02325 96 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 QPRTQ15274 297 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 TCHHL1Q5QJ38 904 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 NEPROQ6NW34 567 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 PRR23BQ6ZRT6 265 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MCOLN2Q8IZK6 566 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ATG4AQ8WYN0 398 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 CDC42EP4Q9H3Q1 356 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 GPATCH2LQ9NWQ4 482 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 TMEM88BA6NKF7 163 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 RIIAD1A6NNX1 92 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 SERPINA3P01011 423 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 ARF4P18085 180 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 IDSP22304 550 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 AMPD1P23109 780 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 EIF2B2P49770 351 aaKnown RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 AIF1P55008 147 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 USP46P62068 366 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 VPS26BQ4G0F5 336 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 LCN1P1Q5VSP4 162 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 MAP1SQ66K74 1059 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-204ENST00000423058 RAP1GAP2Q684P5 730 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 KCNT2Q6UVM3 1135 aa6.87□□□□□ -1.31
SCN1A-204ENST00000423058 DEFB106AQ8N104 65 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms