RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PCDHB9Q9Y5E1 797 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 CCDC78A2IDD5 438 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 MAGEC1O60732 1142 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ADH5P11766 374 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 SPAM1P38567 509 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 WDR4P57081 412 aaKnown RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 ELP6Q0PNE2 266 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 CYTH1Q15438 398 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ZYG11AQ6WRX3 759 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 OR8D1Q8WZ84 308 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 KLHL29Q96CT2 875 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 CPEB1Q9BZB8 566 aaKnown RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 CIPCQ9C0C6 399 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ZFP14Q9HCL3 533 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 COPG2Q9UBF2 871 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ZNF711Q9Y462 761 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 RGSL1A5PLK6 1076 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 PGLSO95336 258 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 OR56A5P0C7T3 313 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 PCSK2P16519 638 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 MTHFRP42898 656 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ABCE1P61221 599 aaKnown RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 STX1BP61266 288 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 GTF2H3Q13889 308 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 MYLK3Q32MK0 819 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 HECTD2Q5U5R9 776 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 GAREM2Q75VX8 874 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 TMCO2Q7Z6W1 182 aaPredicted RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 DNAJC5GQ8N7S2 189 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 CNDP1Q96KN2 507 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 PRICKLE1Q96MT3 831 aaPredicted RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 SLC46A2Q9BY10 475 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 MRPL40Q9NQ50 206 aaKnown RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 NDFIP2Q9NV92 336 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 MARK1Q9P0L2 795 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ANGPTL3Q9Y5C1 460 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 TNPO3Q9Y5L0 923 aaKnown RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 KLKB1P03952 638 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 ESRRAP11474 423 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 CHRM3P20309 590 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 DGKAP23743 735 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 SLC1A2P43004 574 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 PGFP49763 221 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 LMAN2Q12907 356 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 PDE1CQ14123 709 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 C22orf39Q6P5X5 142 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 MTSS1LQ765P7 747 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 TMC8Q8IU68 726 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 MYO1HQ8N1T3 1032 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 CBARPQ8N350 705 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 KDM1BQ8NB78 822 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 PIWIL2Q8TC59 973 aaKnown RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 SLC22A17Q8WUG5 538 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 CDKN2AIPNLQ96HQ2 116 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 MAGEB10Q96LZ2 347 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 FCRL3Q96P31 734 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 SUV39H2Q9H5I1 410 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 GOT2P00505 430 aaKnown RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 DHRS4L1P0CG22 281 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 GFAPP14136 432 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 MC4RP32245 332 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 MAGEA9P43362 315 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 PIK3CGP48736 1102 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 CORO7P57737 925 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 IL2P60568 153 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 PPARDQ03181 441 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 MBLAC2Q68D91 279 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 GRASPQ7Z6J2 395 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 CILP2Q8IUL8 1156 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 SLC41A1Q8IVJ1 513 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 CCNYL1Q8N7R7 359 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 VN1R2Q8NFZ6 395 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 OR4K2Q8NGD2 314 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 SMARCD2Q92925 531 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 FBXO6Q9NRD1 293 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 SLC17A7Q9P2U7 560 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 SPECC1L-ADORA2AF8WAN1 911 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 PRMT5O14744 637 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 NPHS1O60500 1241 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 VPS4BO75351 444 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 PKMP14618 531 aaKnown RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 TYRP14679 529 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 ABL2P42684 1182 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 USP4Q13107 963 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 CTBP1Q13363 440 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 LACTB2Q53H82 288 aaPredicted RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 SUSD6Q92537 303 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 BHMTQ93088 406 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 TBATAQ96M53 351 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 C17orf80Q9BSJ5 609 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 ZDHHC6Q9H6R6 413 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 FCF1Q9Y324 198 aaKnown RBP8.4□□□□□ -1.06
USP54-203ENST00000418501 CAPN7Q9Y6W3 813 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 MICAL3Q7RTP6 2002 aa8.4□□□□□ -1.06
USP54-203ENST00000418501 C1orf232A0A0U1RR37 186 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 MYO1CO00159 1063 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 NEMP1O14524 444 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 CA3P07451 260 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 CSHL1Q14406 222 aa8.4□□□□□ -1.07
USP54-203ENST00000418501 ICE2Q659A1 982 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms