RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KLF10Q13118 480 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 FAAH2Q6GMR7 532 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 FAM20CQ8IXL6 584 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 TNS4Q8IZW8 715 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CDYL2Q8N8U2 506 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC38A2Q96QD8 506 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 HSD17B14Q9BPX1 270 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CDT1Q9H211 546 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 PNPOQ9NVS9 261 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 ABCG2Q9UNQ0 655 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SAMHD1Q9Y3Z3 626 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SHOX2O60902 331 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 TM7SF2O76062 418 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 LGALS2P05162 132 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CDK9P50750 372 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 S100A12P80511 92 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 PYDC2Q56P42 97 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 WSCD1Q658N2 575 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 FBXO42Q6P3S6 717 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 DSG4Q86SJ6 1040 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 GPR180Q86V85 440 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 IRF2BP1Q8IU81 584 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 POMGNT2Q8NAT1 580 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 OR52L1Q8NGH7 329 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 MTFMTQ96DP5 389 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 WDR18Q9BV38 432 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 MECRQ9BV79 373 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 XKR8Q9H6D3 395 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 SP140LQ9H930 580 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 STOX2Q9P2F5 926 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 BTRCQ9Y297 605 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 PLLPQ9Y342 182 aa10.29□□□□□ -0.76
LIMCH1-203ENST00000396595 CASZ1Q86V15 1759 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 HAT1O14929 419 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 DDX3YO15523 660 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 NRP2O60462 931 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TMCC2O75069 709 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ENO2P09104 434 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 GOT1P17174 413 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 WEE1P30291 646 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 RCVRNP35243 200 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 LSM3P62310 102 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ACVR2BQ13705 512 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PCBP1Q15365 356 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PHF10Q8WUB8 498 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ZYG11BQ9C0D3 744 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ADGRB1O14514 1584 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 MAGEC1O60732 1142 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PPIBP23284 216 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 NOMO1Q15155 1222 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SCAIQ8N9R8 606 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 FAM47BQ8NA70 645 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 AP3S1Q92572 193 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 MFSD14AQ96MC6 490 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 C7orf26Q96N11 449 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 GAD1Q99259 594 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ACO2Q99798 780 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TMEM138Q9NPI0 162 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PRDM8Q9NQV8 689 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 STARD7Q9NQZ5 370 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TRIM64A6NGJ6 449 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TRIM64BA6NI03 449 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 CHP2O43745 196 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SH3BGRLO75368 114 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 MAFO75444 373 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ECDO95905 644 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 UMPSP11172 480 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 VEGFAP15692 232 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ATP5C1P36542 298 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SGCGQ13326 291 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 LYPLAL1Q5VWZ2 237 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ANKRD26P1Q6NSI1 321 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 NFKBIZQ9BYH8 718 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 NMUR2Q9GZQ4 415 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 POLR1DQ9Y2S0 133 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 DIP2CQ9Y2E4 1556 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 MAP2P11137 1827 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PXDNQ92626 1479 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 QSOX1O00391 747 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 PIAS1O75925 651 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ETS2P15036 469 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 MATKP42679 507 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 HSPA14Q0VDF9 509 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 LPIN1Q14693 890 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SETMARQ53H47 684 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 DACT2Q5SW24 774 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 METTL21CQ5VZV1 264 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 OLFML2AQ68BL7 652 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 OR5B17Q8NGF7 314 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 VMP1Q96GC9 406 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 AP1S3Q96PC3 154 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC9A7Q96T83 725 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 LGMNQ99538 433 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 TTYH1Q9H313 450 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 ZFP14Q9HCL3 533 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SPG21Q9NZD8 308 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 LYVE1Q9Y5Y7 322 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 VWDEQ8N2E2 1590 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 SPATA31C1P0DKV0 1188 aa10.28□□□□□ -0.76
LIMCH1-203ENST00000396595 COL6A2P12110 1019 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms