RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DARS2Q6PI48 645 aaKnown RBP21.78■■□□□ 1.08
CLN3-207ENST00000395653 Q6ZSR6 202 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 PID1Q7Z2X4 250 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 PTAR1Q7Z6K3 402 aaPredicted RBP21.78■■□□□ 1.08
CLN3-207ENST00000395653 LPCAT1Q8NF37 534 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 TRIB3Q96RU7 358 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 TLR10Q9BXR5 811 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 ADGRE3Q9BY15 652 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 C10orf88Q9H8K7 445 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 DNPEPQ9ULA0 475 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 TP53BP1Q12888 1972 aaPredicted RBP21.78■■□□□ 1.08
CLN3-207ENST00000395653 KNL1Q8NG31 2342 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 A0A1B0GTQ1 180 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 TCRBV7S2A1N4TA0A589 114 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 TOR1BO14657 336 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 YKT6O15498 198 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 RECQL5O94762 991 aaPredicted RBP21.77■■□□□ 1.08
CLN3-207ENST00000395653 ALPIP09923 528 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 CD59P13987 128 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 HNF1BP35680 557 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 ARRB1P49407 418 aaPredicted RBP21.77■■□□□ 1.08
CLN3-207ENST00000395653 ARHGEF7Q14155 803 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 WSCD2Q2TBF2 565 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 SLC13A5Q86YT5 568 aaPredicted RBP21.77■■□□□ 1.08
CLN3-207ENST00000395653 SLC22A18ASQ8N1D0 253 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 CBARPQ8N350 705 aaPredicted RBP21.77■■□□□ 1.08
CLN3-207ENST00000395653 SPATA22Q8NHS9 363 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 COQ10AQ96MF6 247 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 FCRL5Q96RD9 977 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 LYSMD1Q96S90 227 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 MBNL1Q9NR56 388 aaKnown RBP21.77■■□□□ 1.08
CLN3-207ENST00000395653 KCTD5Q9NXV2 234 aa21.77■■□□□ 1.08
CLN3-207ENST00000395653 TMEM131Q92545 1883 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 LRRK1Q38SD2 2015 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 ANKRD66B4E2M5 251 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 KCNN4O15554 427 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 PCDHGA12O60330 932 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 STK10O94804 968 aaKnown RBP21.76■■□□□ 1.07
CLN3-207ENST00000395653 MT-CYBP00156 380 aaPredicted RBP21.76■■□□□ 1.07
CLN3-207ENST00000395653 ZNF30P17039 623 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 GM2AP17900 193 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 RXRGP48443 463 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 YPEL5P62699 121 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 CDK18Q07002 472 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 ACOX1Q15067 660 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 IRF4Q15306 451 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 ITPRIPL1Q6GPH6 555 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 SLC35B2Q8TB61 432 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 FAM153AQ9UHL3 310 aa21.76■■□□□ 1.07
CLN3-207ENST00000395653 ASCC3Q8N3C0 2202 aaKnown RBP21.75■■□□□ 1.07
CLN3-207ENST00000395653 DCDC2BA2VCK2 349 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 CSRP1P21291 193 aaKnown RBP21.75■■□□□ 1.07
CLN3-207ENST00000395653 CCDC173Q0VFZ6 552 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 SUZ12Q15022 739 aaKnown RBP21.75■■□□□ 1.07
CLN3-207ENST00000395653 PTPRRQ15256 657 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 QPCTQ16769 361 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 PRAMEF14Q5SWL7 426 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 LRRC66Q68CR7 880 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 CRTC1Q6UUV9 634 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 DBX2Q6ZNG2 339 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 PIP4P1Q86T03 277 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 TSPAN33Q86UF1 283 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 MLPHQ9BV36 600 aaPredicted RBP21.75■■□□□ 1.07
CLN3-207ENST00000395653 FRMD8P1Q9BZ68 369 aaPredicted RBP21.75■■□□□ 1.07
CLN3-207ENST00000395653 GBA3Q9H227 469 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 USP29Q9HBJ7 922 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 RSPH14Q9UHP6 348 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 R3HDM2Q9Y2K5 976 aaKnown RBP21.75■■□□□ 1.07
CLN3-207ENST00000395653 JRKLQ9Y4A0 524 aa21.75■■□□□ 1.07
CLN3-207ENST00000395653 SPTY2D1-AS1A0A0U1RR47 76 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 MTM1Q13496 603 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 PDE1CQ14123 709 aaPredicted RBP21.74■■□□□ 1.07
CLN3-207ENST00000395653 GALNT3Q14435 633 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 SHBQ15464 509 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 PCSK7Q16549 785 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 KDELC1Q6UW63 502 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 IFT43Q96FT9 208 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 SPATA13Q96N96 652 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 SMIM14Q96QK8 99 aa21.74■■□□□ 1.07
CLN3-207ENST00000395653 PMPCBO75439 489 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 NDST3O95803 873 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 EPHA8P29322 1005 aaPredicted RBP21.73■■□□□ 1.07
CLN3-207ENST00000395653 THOP1P52888 689 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 FZD2Q14332 565 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 ANKRD20A2Q5SQ80 823 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 ANKRD20A1Q5TYW2 823 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 ANKRD20A3Q5VUR7 823 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 KDM7AQ6ZMT4 941 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 DGLUCYQ7Z3D6 616 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 HSD11B1LQ7Z5J1 315 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 RAVER1Q8IY67 606 aaKnown RBP21.73■■□□□ 1.07
CLN3-207ENST00000395653 NUS1Q96E22 293 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 DTD2Q96FN9 168 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 OXNAD1Q96HP4 312 aaPredicted RBP21.73■■□□□ 1.07
CLN3-207ENST00000395653 SLC32A1Q9H598 525 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 UBP1Q9NZI7 540 aa21.73■■□□□ 1.07
CLN3-207ENST00000395653 FLRT2O43155 660 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 EPOP01588 193 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 ETV3P41162 512 aa21.72■■□□□ 1.07
CLN3-207ENST00000395653 PTSQ03393 145 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms