RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 IDH3BO43837 385 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 TMCC2O75069 709 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 PEX11AO75192 247 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 CSDE1O75534 798 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 IL1BP01584 269 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 LAG3P18627 525 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 IL12AP29459 219 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 BUD31P41223 144 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 PKNOX1P55347 436 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 RPP38P78345 283 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 CDK18Q07002 472 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 GRB14Q14449 540 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 PTPRNQ16849 979 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 C5orf22Q49AR2 442 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 DHDDSQ86SQ9 333 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 SLC9A9Q8IVB4 645 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 RAVER1Q8IY67 606 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 GPR135Q8IZ08 494 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 ZNF483Q8TF39 744 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 HDAC7Q8WUI4 952 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 PRCCQ92733 491 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 ACO2Q99798 780 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 SEMA3CQ99985 751 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 TDRD1Q9BXT4 1180 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 AGXT2Q9BYV1 514 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.48□□□□□ -1.37
UPF2-201ENST00000356352 PHPT1Q9NRX4 125 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 MARK1Q9P0L2 795 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 ARMCX1Q9P291 453 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 MGAT4AQ9UM21 535 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 SAMHD1Q9Y3Z3 626 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 COLEC10Q9Y6Z7 277 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 CYP3A7-CYP3A51PA0A087WV96 503 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 RBM47A0AV96 593 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 A8MX80 341 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 F8VP50 259 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 TEX46H3BTG2 121 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 PLK4O00444 970 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 FARP2O94887 1054 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 NTRK1P04629 796 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 ERCC2P18074 760 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 CYP3A7P24462 503 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 NUMBP49757 651 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 FKBP1BP68106 108 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 MRPS5P82675 430 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 DGCR6Q14129 220 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 PARP15Q460N3 678 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 C17orf64Q86WR6 236 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 IFNLR1Q8IU57 520 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 TTC29Q8NA56 475 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 EPS8L1Q8TE68 723 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 TRAPPC12Q8WVT3 735 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 ART4Q93070 314 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 TLR10Q9BXR5 811 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 MIR1-1HGQ9H1L0 117 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 PLGRKTQ9HBL7 147 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 DDX18Q9NVP1 670 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 PIH1D1Q9NWS0 290 aaKnown RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 KCTD5Q9NXV2 234 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 ABI3Q9P2A4 366 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 RCOR3Q9P2K3 495 aaPredicted RBP6.48□□□□□ -1.37
UPF2-201ENST00000356352 ZNF222Q9UK12 451 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 SNX7Q9UNH6 387 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 PSMD13Q9UNM6 376 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 DCCP43146 1447 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 TNS2Q63HR2 1409 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 E9PCH4 1651 aa6.48□□□□□ -1.37
UPF2-201ENST00000356352 A0A1W2PQ72 361 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CLDN11O75508 207 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 TOP3BO95985 862 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 GLRA2P23416 452 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MATKP42679 507 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CXCR3P49682 368 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RBBP4Q09028 425 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 TBX2Q13207 712 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 MYBPC3Q14896 1274 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 BMT2Q1RMZ1 405 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 FOXR2Q6PJQ5 311 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SPESP1Q6UW49 350 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 DEF8Q6ZN54 512 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ARHGAP36Q6ZRI8 547 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PTCHD4Q6ZW05 846 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 C1orf186Q6ZWK4 172 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 RASSF5Q8WWW0 418 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MKL1Q969V6 931 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 AP2M1Q96CW1 435 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 EBNA1BP2Q99848 306 aaKnown RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 TMEM27Q9HBJ8 222 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 TMPRSS4Q9NRS4 437 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 CHST7Q9NS84 486 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 ABHD14A-ACY1A0A1B0GW23 586 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 BTN3A3O00478 584 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 WNT10BO00744 389 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 XKRYO14609 159 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 PRMT5O14744 637 aaPredicted RBP6.47□□□□□ -1.37
UPF2-201ENST00000356352 PER2O15055 1255 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 MPZL2O60487 215 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 DNAJA2O60884 412 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 SCN2BO60939 215 aa6.47□□□□□ -1.37
UPF2-201ENST00000356352 FKTNO75072 461 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms